Updated test coverage

.vscode/settings.json

@@ -38,6 +38,6 @@
 	],
 	"sonarlint.connectedMode.project": {
 		"connectionId": "mattrixwvSonarqube",
-		"projectKey": "mattrixwv_cipherstreamjava_AYGcdy79opaC7KAbzMEs"
+		"projectKey": "CipherStreamJava"
 	}
 }

pom.xml

@@ -63,12 +63,7 @@
 			<groupId>org.mockito</groupId>
 			<artifactId>mockito-core</artifactId>
 			<version>5.3.0</version>
-		</dependency>
-
-		<dependency>
-			<groupId>org.mockito</groupId>
-			<artifactId>mockito-junit-jupiter</artifactId>
-			<version>5.3.0</version>
+			<scope>test</scope>
 		</dependency>
 	</dependencies>
 

src/main/java/com/mattrixwv/cipherstream/combination/ADFGVX.java

@@ -1,7 +1,7 @@
 //CipherStreamJava/src/main/java/com/mattrixwv/CipherStreamJava/combination/ADFGVX.java
 //Mattrixwv
 // Created: 01-26-22
-//Modified: 07-09-22
+//Modified: 04-14-23
 package com.mattrixwv.cipherstream.combination;
 
 
@@ -18,11 +18,11 @@ import com.mattrixwv.cipherstream.polysubstitution.PolybiusSquare;
 
 
 public class ADFGVX{
-	private static final Logger logger = LoggerFactory.getLogger(ADFGVX.class);
+	protected static Logger logger = LoggerFactory.getLogger(ADFGVX.class);
 
 	//Internal classes
-	private class LargePolybiusSquare extends PolybiusSquare{
-		private static final Logger logger = LoggerFactory.getLogger(LargePolybiusSquare.class);
+	protected class LargePolybiusSquare extends PolybiusSquare{
+		protected static final Logger logger = LoggerFactory.getLogger(LargePolybiusSquare.class);
 
 		@Override
 		protected void createGrid(){
@@ -183,38 +183,38 @@ public class ADFGVX{
 		}
 	}
 	//Fields
-	private boolean preserveCapitals;	//Whether to respect capitals in the output string
-	private boolean preserveWhitespace;	//Whether to respect whitespace in the output string
-	private boolean preserveSymbols;	//Whether to respect symbols in the output string
-	private String inputString;		//The string that needs encoded/decoded
-	private String outputString;	//The string that is output after encoding/decoding
-	private String squareKeyword;	//The keyword used in the Polybius Square
-	private String keyword;			//The Keyword used in the Columnar cipher
+	protected boolean preserveCapitals;	//Whether to respect capitals in the output string
+	protected boolean preserveWhitespace;	//Whether to respect whitespace in the output string
+	protected boolean preserveSymbols;	//Whether to respect symbols in the output string
+	protected String inputString;		//The string that needs encoded/decoded
+	protected String outputString;	//The string that is output after encoding/decoding
+	protected String squareKeyword;	//The keyword used in the Polybius Square
+	protected String keyword;			//The Keyword used in the Columnar cipher
 	//Internal ciphers
-	private LargePolybiusSquare largePolybiusSquare;	//The first step in encoding
-	private Columnar columnar;	//The second step in encoding
+	protected LargePolybiusSquare largePolybiusSquare;	//The first step in encoding
+	protected Columnar columnar;	//The second step in encoding
 
 
 	//Ensures Polybius keyword constraints
-	private void setSquareKeyword(String squareKeyword) throws InvalidKeywordException{
+	protected void setSquareKeyword(String squareKeyword) throws InvalidKeywordException{
 		if(squareKeyword == null){
 			throw new InvalidKeywordException("Square Keyword cannot be null");
 		}
 
-		logger.debug("Square Keyword '{}'", squareKeyword);
+		logger.debug("squareKeyword = {}", squareKeyword);
 		this.squareKeyword = squareKeyword;
 	}
 	//Ensures Columnar keyword constraints
-	private void setKeyword(String keyword) throws InvalidKeywordException{
+	protected void setKeyword(String keyword) throws InvalidKeywordException{
 		if(keyword == null){
 			throw new InvalidKeywordException("Keyword cannot be null");
 		}
 
-		logger.debug("Keyword '{}'", keyword);
+		logger.debug("keyword = {}", keyword);
 		this.keyword = keyword;
 	}
 	//Ensures inputString constraints
-	private void setInputString(String inputString) throws InvalidInputException{
+	protected void setInputString(String inputString) throws InvalidInputException{
 		if(inputString == null){
 			throw new InvalidInputException("Input cannot be null");
 		}
@@ -246,31 +246,37 @@ public class ADFGVX{
 		}
 	}
 	//Format the output string with capitals, symbols, and numbers that are in the input string
-	private void formatOutputStringEncode(){
-		logger.debug("Formatting output string");
+	protected void formatOutputStringEncode(){
+		logger.debug("Formatting output string to match input string");
 
 		StringBuilder output = new StringBuilder();
 		int outputLocation = 0;
 		for(char ch : inputString.toCharArray()){
-			logger.debug("Input string {}", ch);
+			logger.debug("Input character {}", ch);
 			if(Character.isUpperCase(ch)){
+				logger.debug("Converting output to uppercase");
+
 				output.append(Character.toUpperCase(outputString.charAt(outputLocation++)));
 				output.append(Character.toUpperCase(outputString.charAt(outputLocation++)));
 			}
 			else if(Character.isLowerCase(ch)){
+				logger.debug("Converting output to lowercase");
+
 				output.append(Character.toLowerCase(outputString.charAt(outputLocation++)));
 				output.append(Character.toLowerCase(outputString.charAt(outputLocation++)));
 			}
 			else{
+				logger.debug("Appending symbol to output");
+
 				output.append(ch);
 			}
 		}
 
-		logger.debug("Saving output string '{}'", output);
 		outputString = output.toString();
+		logger.debug("Saving output string '{}'", outputString);
 	}
-	private void formatOutputStringDecode(){
-		logger.debug("Formatting output string");
+	protected void formatOutputStringDecode(){
+		logger.debug("Formatting output string to match input string");
 
 		StringBuilder output = new StringBuilder();
 		int outputLocation = 0;
@@ -278,23 +284,29 @@ public class ADFGVX{
 			char ch = inputString.charAt(inputLocation);
 			logger.debug("Input character {}", ch);
 			if(Character.isUpperCase(ch)){
+				logger.debug("Converting output to uppercase");
+
 				output.append(Character.toUpperCase(outputString.charAt(outputLocation++)));
 				++inputLocation;
 			}
 			else if(Character.isLowerCase(ch)){
+				logger.debug("Converting output to lowercase");
+
 				output.append(Character.toLowerCase(outputString.charAt(outputLocation++)));
 				++inputLocation;
 			}
 			else{
+				logger.debug("Appending symbol to output");
+
 				output.append(ch);
 			}
 		}
 
-		logger.debug("Saving output string '{}'", output);
 		outputString = output.toString();
+		logger.debug("Saving output string '{}'", outputString);
 	}
 	//Encodes the inputString and stores the result in outputString
-	private String encode() throws InvalidCharacterException, InvalidInputException, InvalidKeywordException{
+	protected String encode() throws InvalidCharacterException, InvalidInputException, InvalidKeywordException{
 		//Encode the input with polybius
 		logger.debug("Encoding using Polybius Square");
 		String polybiusOutput = largePolybiusSquare.encode(squareKeyword, inputString);
@@ -303,7 +315,7 @@ public class ADFGVX{
 		polybiusOutput = polybiusOutput.replace("1", "A").replace("2", "D").replace("3", "F").replace("4", "G").replace("5", "V").replace("6", "X");
 
 		//Encode polybius's output with columnar
-		logger.debug("Encoding with columnar");
+		logger.debug("Encoding using columnar");
 		String columnarOutput = columnar.encode(keyword, polybiusOutput);
 		outputString = columnarOutput;
 
@@ -313,16 +325,16 @@ public class ADFGVX{
 		return outputString;
 	}
 	//Decodes the inputString and stores the result in outputString
-	private String decode() throws InvalidKeywordException, InvalidCharacterException, InvalidInputException{
+	protected String decode() throws InvalidKeywordException, InvalidCharacterException, InvalidInputException{
 		//Decode the input with columnar
-		logger.debug("Decoding columnar");
+		logger.debug("Decoding using columnar");
 		String columnarOutput = columnar.decode(keyword, inputString);
 
 		//Change the symbols to the correct ones for polybius
-		logger.debug("Replacing characters with coordinates");
+		logger.debug("Replacing letters with coordinates");
 		columnarOutput = columnarOutput.replace("A", "1").replace("D", "2").replace("F", "3").replace("G", "4").replace("V", "5").replace("X", "6");
 		//Decode with polybius
-		logger.debug("Decoding Polybius Square");
+		logger.debug("Decoding using Polybius Square");
 		String polybiusOutput = largePolybiusSquare.decode(squareKeyword, columnarOutput);
 		outputString = polybiusOutput;
 
@@ -380,7 +392,7 @@ public class ADFGVX{
 	}
 	//Makes sure all of the variables are empty
 	public void reset() throws InvalidCharacterException{
-		logger.debug("Reseting fields");
+		logger.debug("Resetting fields");
 
 		largePolybiusSquare = new LargePolybiusSquare(false, false);
 		columnar = new Columnar(false, false, false, true, 'B');

src/main/java/com/mattrixwv/cipherstream/combination/ADFGX.java

@@ -1,7 +1,7 @@
 //CipherStreamJava/src/main/java/com/mattrixwv/CipherStreamJava/combination/ADFGX.java
 //Mattrixwv
 // Created: 01-25-22
-//Modified: 07-09-22
+//Modified: 04-14-23
 package com.mattrixwv.cipherstream.combination;
 
 
@@ -55,7 +55,7 @@ public class ADFGX{
 			throw new InvalidInputException("Input cannot be null");
 		}
 
-		logger.debug("original input string '{}'", inputString);
+		logger.debug("Original input string '{}'", inputString);
 		if(!preserveCapitals){
 			logger.debug("Removing capitals");
 
@@ -77,7 +77,7 @@ public class ADFGX{
 		if(this.inputString.isBlank()){
 			throw new InvalidInputException("Input cannot be blank");
 		}
-		logger.debug("cleaned input string '{}'", inputString);
+		logger.debug("Cleaned input string '{}'", inputString);
 	}
 	//Format the output string with capitals, symbols, and numbers that are in the input string
 	protected void formatOutputStringEncode(){
@@ -106,8 +106,8 @@ public class ADFGX{
 			}
 		}
 
-		logger.debug("Saving output string '{}'", outputString);
 		outputString = output.toString();
+		logger.debug("Saving output string '{}'", outputString);
 	}
 	protected void formatOutputStringDecode(){
 		logger.debug("Formatting output string to match input string");
@@ -135,8 +135,8 @@ public class ADFGX{
 			}
 		}
 
-		logger.debug("Saving output string '{}'", output);
 		outputString = output.toString();
+		logger.debug("Saving output string '{}'", outputString);
 	}
 	//Encodes the inputString and stores the result in outputString
 	protected void encode() throws InvalidCharacterException, InvalidInputException, InvalidKeywordException{

src/main/java/com/mattrixwv/cipherstream/monosubstitution/Affine.java

@@ -1,7 +1,7 @@
 //CipherStreamJava/src/main/java/com/mattrixwv/CipherStreamJava/polySubstitution/Affine.java
 //Mattrixwv
 // Created: 01-26-22
-//Modified: 07-09-22
+//Modified: 04-15-23
 package com.mattrixwv.cipherstream.monosubstitution;
 
 
@@ -15,24 +15,26 @@ import com.mattrixwv.NumberAlgorithms;
 
 
 public class Affine{
-	private static final Logger logger = LoggerFactory.getLogger(Affine.class);
+	protected static Logger logger = LoggerFactory.getLogger(Affine.class);
 
 	//Fields
-	private boolean preserveCapitals;	//Whether to respect capitals in the output string
-	private boolean preserveSymbols;	//Whether to respect symbols in the output string
-	private boolean preserveWhitespace;	//Whether to respect whitespace in the output string
-	private String inputString;		//The string that needs encoded/decoded
-	private String outputString;	//The string that is output after encoding/decoding
-	private int key1;	//The multiplicative key. Key1 must be relatively prime to 26
-	private int key2;	//The additive key
+	protected boolean preserveCapitals;	//Whether to respect capitals in the output string
+	protected boolean preserveSymbols;	//Whether to respect symbols in the output string
+	protected boolean preserveWhitespace;	//Whether to respect whitespace in the output string
+	protected String inputString;		//The string that needs encoded/decoded
+	protected String outputString;	//The string that is output after encoding/decoding
+	protected int key1;	//The multiplicative key. Key1 must be relatively prime to 26
+	protected int key2;	//The additive key
 
 	//Ensures key1 constraints
-	private void setKey1(int key1) throws InvalidKeywordException{
+	protected void setKey1(int key1) throws InvalidKeywordException{
 		logger.debug("Setting key1 {}", key1);
 
+		//Mod 26 to ensure no overflow
+		key1 %= 26;
+
 		//If the key is negative change it to possitive
 		if(key1 < 0){
-			key1 %= 26;
 			key1 += 26;
 		}
 
@@ -47,12 +49,14 @@ public class Affine{
 		logger.debug("Cleaned key1 {}", key1);
 	}
 	//Ensures key2 constraints
-	private void setKey2(int key2){
+	protected void setKey2(int key2){
 		logger.debug("Setting key2 {}", key2);
 
+		//Mod 26 to ensure no overflow
+		key2 %= 26;
+
 		//If the key is negative change it to possitive
 		if(key2 < 0){
-			key2 %= 26;
 			key2 += 26;
 		}
 
@@ -62,7 +66,7 @@ public class Affine{
 		logger.debug("Cleaned key2 {}", key2);
 	}
 	//Ensures inputString constraints
-	private void setInputString(String inputString) throws InvalidInputException{
+	protected void setInputString(String inputString) throws InvalidInputException{
 		if(inputString == null){
 			throw new InvalidInputException("Input must not be null");
 		}
@@ -94,7 +98,7 @@ public class Affine{
 		}
 	}
 	//Encodes the inputString and stores the result in outputString
-	private String encode(){
+	protected void encode(){
 		logger.debug("Encoding");
 
 		//Step through every character in the input and encode it if needed
@@ -108,7 +112,7 @@ public class Affine{
 				//Encode the number
 				letter = ((key1 * letter) + key2) % 26;
 				//Change the new number back to a character and append it to the output
-				char newChar = (char)(letter + 65);
+				char newChar = (char)(letter + 'A');
 				output.append(newChar);
 
 				logger.debug("Encoded char {}", newChar);
@@ -119,7 +123,7 @@ public class Affine{
 				//Encode the number
 				letter = ((key1 * letter) + key2) % 26;
 				//Change the new number back to a character and append it to the output
-				char newChar = (char)(letter + 97);
+				char newChar = (char)(letter + 'a');
 				output.append(newChar);
 
 				logger.debug("Encoded char {}", newChar);
@@ -131,12 +135,11 @@ public class Affine{
 		}
 
 		//Save and return the output
-		logger.debug("Saving output string '{}'", output);
 		outputString = output.toString();
-		return outputString;
+		logger.debug("Saving output string '{}'", outputString);
 	}
 	//Decodes the inputString and stores the result in outputString
-	private String decode(){
+	protected void decode(){
 		logger.debug("Decoding");
 
 		//Find the multiplicative inverse of key1
@@ -186,9 +189,8 @@ public class Affine{
 		}
 
 		//Save and return the output
-		logger.debug("Saving output string '{}'", output);
 		outputString = output.toString();
-		return outputString;
+		logger.debug("Saving output string '{}'", outputString);
 	}
 
 
@@ -211,14 +213,16 @@ public class Affine{
 		setKey1(key1);
 		setKey2(key2);
 		setInputString(inputString);
-		return encode();
+		encode();
+		return outputString;
 	}
 	//Decodes inputString using key1 and key2 and returns the result
 	public String decode(int key1, int key2, String inputString) throws InvalidKeywordException, InvalidInputException{
 		setKey1(key1);
 		setKey2(key2);
 		setInputString(inputString);
-		return decode();
+		decode();
+		return outputString;
 	}
 
 	//Returns the cleaned inputString

src/main/java/com/mattrixwv/cipherstream/monosubstitution/Atbash.java

@@ -1,7 +1,7 @@
 //CipherStreamJava/src/main/java/com/mattrixwv/CipherStreamJava/monoSubstitution/Atbash.java
 //Mattrixwv
 // Created: 07-25-21
-//Modified: 07-09-22
+//Modified: 04-15-23
 package com.mattrixwv.cipherstream.monosubstitution;
 
 
@@ -12,17 +12,17 @@ import com.mattrixwv.cipherstream.exceptions.InvalidInputException;
 
 
 public class Atbash{
-	private static final Logger logger = LoggerFactory.getLogger(Atbash.class);
+	protected static Logger logger = LoggerFactory.getLogger(Atbash.class);
 
-	private String inputString;		//Holds the string that needs encoded or decoded
-	private String outputString;	//The encoded/decoded string
-	private boolean preserveCapitals;	//Whether to respect capitals in the output string
-	private boolean preserveWhitespace;	//Whether to respect whitespace in the output string
-	private boolean preserveSymbols;	//Whether to respect symbols in the output string
+	protected String inputString;		//Holds the string that needs encoded or decoded
+	protected String outputString;		//The encoded/decoded string
+	protected boolean preserveCapitals;	//Whether to respect capitals in the output string
+	protected boolean preserveWhitespace;	//Whether to respect whitespace in the output string
+	protected boolean preserveSymbols;	//Whether to respect symbols in the output string
 
 
 	//Encodes inputString and stores in outputString
-	private String encode(){
+	protected String encode(){
 		logger.debug("Encoding");
 		StringBuilder output = new StringBuilder();
 		//Step through every element in the inputString and shift it the correct amount
@@ -52,9 +52,9 @@ public class Atbash{
 		return outputString;
 	}
 	//Removes all invalid characters and sets inputString
-	private void setInputString(String inputString) throws InvalidInputException{
+	protected void setInputString(String inputString) throws InvalidInputException{
 		if(inputString == null){
-			throw new NullPointerException("Input cannot be null");
+			throw new InvalidInputException("Input cannot be null");
 		}
 
 		logger.debug("Original input string '{}'", inputString);

src/main/java/com/mattrixwv/cipherstream/monosubstitution/Autokey.java

@@ -1,7 +1,7 @@
 //CipherStreamJava/src/main/java/com/mattrixwv/CipherStreamJava/Autokey.java
 //Mattrixwv
 // Created: 07-25-21
-//Modified: 07-09-22
+//Modified: 04-15-23
 package com.mattrixwv.cipherstream.monosubstitution;
 
 
@@ -13,10 +13,10 @@ import com.mattrixwv.cipherstream.exceptions.InvalidKeywordException;
 
 
 public class Autokey extends Vigenere{
-	private static final Logger logger = LoggerFactory.getLogger(Autokey.class);
+	protected static Logger logger = LoggerFactory.getLogger(Autokey.class);
 
 	//Special rules for setting the strings for encoding
-	private void encodeSet(String keyword, String inputString) throws InvalidKeywordException, InvalidInputException{
+	protected void encodeSet(String keyword, String inputString) throws InvalidKeywordException, InvalidInputException{
 		logger.debug("Setting fields for encoding");
 
 		//Set the input
@@ -44,7 +44,7 @@ public class Autokey extends Vigenere{
 		setOffset();
 	}
 	//Setting the strings for decoding
-	private void decodeSet(String keyword, String inputString) throws InvalidKeywordException, InvalidInputException{
+	protected void decodeSet(String keyword, String inputString) throws InvalidKeywordException, InvalidInputException{
 		logger.debug("Setting fields for decoding");
 
 		//Remove all unneccessary elements from the key
@@ -88,11 +88,6 @@ public class Autokey extends Vigenere{
 
 					letter += 26;
 				}
-				else if(letter > 'Z'){
-					logger.debug("Wrapping around to A");
-
-					letter -= 26;
-				}
 			}
 			else if(Character.isLowerCase(letter)){
 				logger.debug("Appending lowercase");
@@ -103,11 +98,6 @@ public class Autokey extends Vigenere{
 
 					letter += 26;
 				}
-				else if(letter > 'z'){
-					logger.debug("Wrapping around to a");
-
-					letter -= 26;
-				}
 			}
 
 			logger.debug("Decoded letter {}", letter);
@@ -117,8 +107,8 @@ public class Autokey extends Vigenere{
 		fullOutput.append(currentOutput);
 
 		//Save and return the results
-		logger.debug("Saving output string '{}'", fullOutput);
 		outputString = fullOutput.toString();
+		logger.debug("Saving output string '{}'", outputString);
 		return outputString;
 	}
 

src/main/java/com/mattrixwv/cipherstream/monosubstitution/Baconian.java

@@ -1,7 +1,7 @@
 //CipherStreamJava/src/test/java/com/mattrixwv/CipherStreamJava/Baconian.java
 //Mattrixwv
 // Created: 01-12-22
-//Modified: 07-09-22
+//Modified: 04-15-23
 package com.mattrixwv.cipherstream.monosubstitution;
 
 
@@ -17,21 +17,21 @@ import com.mattrixwv.cipherstream.exceptions.InvalidInputException;
 
 
 public class Baconian{
-	private static final Logger logger = LoggerFactory.getLogger(Baconian.class);
+	protected static Logger logger = LoggerFactory.getLogger(Baconian.class);
 
 	//Conversions
-	private static final ArrayList<String> code = new ArrayList<>(Arrays.asList(
+	protected static final ArrayList<String> code = new ArrayList<>(Arrays.asList(
 		"aaaaa", "aaaab", "aaaba", "aaabb", "aabaa", "aabab", "aabba","aabbb", "abaaa", "abaaa", "abaab", "ababa", "ababb",	//A-M
 		"abbaa", "abbab", "abbba", "abbbb", "baaaa", "baaab", "baaba", "baabb", "baabb", "babaa", "babab", "babba", "babbb"		//N-Z
 	));
-	private String inputString;		//The string that needs encoded/decoded
-	private String outputString;	//The encoded/decoded string
-	private boolean preserveCapitals;	//Whether to respect capitals in the output string
+	protected String inputString;		//The string that needs encoded/decoded
+	protected String outputString;	//The encoded/decoded string
+	protected boolean preserveCapitals;	//Whether to respect capitals in the output string
 
 	//Sets the input string
-	private void setInputStringEncode(String inputString) throws InvalidInputException{
+	protected void setInputStringEncode(String inputString) throws InvalidInputException{
 		if(inputString == null){
-			throw new NullPointerException("Input cannot be null");
+			throw new InvalidInputException("Input cannot be null");
 		}
 
 		logger.debug("Setting input string for encoding '{}'", inputString);
@@ -52,9 +52,12 @@ public class Baconian{
 			throw new InvalidInputException("Input must contain at least 1 letter");
 		}
 	}
-	private void setInputStringDecode(String inputString) throws InvalidCharacterException, InvalidInputException{
+	protected void setInputStringDecode(String inputString) throws InvalidCharacterException, InvalidInputException{
 		if(inputString == null){
-			throw new NullPointerException("Input cannot be null");
+			throw new InvalidInputException("Input cannot be null");
+		}
+		else if(inputString.isBlank()){
+			throw new InvalidInputException("Input cannot be empty");
 		}
 
 		logger.debug("Setting input string for decoding '{}'", inputString);
@@ -86,13 +89,9 @@ public class Baconian{
 		this.inputString = inputString;
 
 		logger.debug("Cleaned input string '{}'", inputString);
-
-		if(this.inputString.isBlank()){
-			throw new InvalidInputException("Input cannot be empty");
-		}
 	}
 	//Encodes the inputString and stores the result in outputString
-	private String encode(){
+	protected void encode(){
 		logger.debug("Encoding");
 		StringJoiner output = new StringJoiner(" ");
 		//Go through every character in the inputString and encode it
@@ -113,17 +112,16 @@ public class Baconian{
 			}
 
 			//Add the encoded character to the output
-			logger.debug("Output 'letter' {}", binary);
+			logger.debug("Output letter {}", binary);
 			output.add(binary);
 		}
 
 		//Save and return the output
-		logger.debug("Saving output string '{}'", output);
 		outputString = output.toString();
-		return outputString;
+		logger.debug("Saving output string '{}'", outputString);
 	}
 	//Decodes the inputString and stores the result in outputString
-	private String decode(){
+	protected String decode(){
 		logger.debug("Decoding");
 
 		StringBuilder output = new StringBuilder();
@@ -154,8 +152,8 @@ public class Baconian{
 		}
 
 		//Save and return the output
-		logger.debug("Saving output string '{}'", output);
 		outputString = output.toString();
+		logger.debug("Saving output string '{}'", outputString);
 		return outputString;
 	}
 
@@ -180,7 +178,8 @@ public class Baconian{
 	public String encode(String inputString) throws InvalidInputException{
 		reset();
 		setInputStringEncode(inputString);
-		return encode();
+		encode();
+		return outputString;
 	}
 	//Sets the inputString and decodes the message
 	public String decode(String inputString) throws InvalidCharacterException, InvalidInputException{

src/main/java/com/mattrixwv/cipherstream/monosubstitution/BaseX.java

@@ -1,7 +1,7 @@
 //CipherStreamJava/src/main/java/com/mattrixwv/CipherStreamJava/monoSubstitution/BaseX.java
 //Mattrixwv
 // Created: 01-08-22
-//Modified: 07-09-22
+//Modified: 04-16-23
 package com.mattrixwv.cipherstream.monosubstitution;
 
 
@@ -16,16 +16,16 @@ import com.mattrixwv.cipherstream.exceptions.InvalidBaseException;
 
 
 public class BaseX{
-	private static final Logger logger = LoggerFactory.getLogger(BaseX.class);
+	protected static Logger logger = LoggerFactory.getLogger(BaseX.class);
 
-	private String inputString;		//The string that needs encoded/decoded
-	private String outputString;	//The encoded/decoded string
-	private int base;	//The base that the number will be encoded at
+	protected String inputString;	//The string that needs encoded/decoded
+	protected String outputString;	//The encoded/decoded string
+	protected int base;	//The base that the number will be encoded at
 
 	//Sets the input string
-	private void setInputStringEncode(String inputString) throws InvalidInputException{
+	protected void setInputStringEncode(String inputString) throws InvalidInputException{
 		if(inputString == null){
-			throw new NullPointerException("Input cannot be null");
+			throw new InvalidInputException("Input cannot be null");
 		}
 
 		logger.debug("Setting input string for encoding '{}'", inputString);
@@ -36,9 +36,9 @@ public class BaseX{
 			throw new InvalidInputException("Input must contain at least 1 letter");
 		}
 	}
-	private void setInputStringDecode(String inputString) throws InvalidCharacterException, InvalidInputException{
+	protected void setInputStringDecode(String inputString) throws InvalidCharacterException, InvalidInputException{
 		if(inputString == null){
-			throw new NullPointerException("Input cannot be null");
+			throw new InvalidInputException("Input cannot be null");
 		}
 
 		logger.debug("Setting input string for decoding '{}'", inputString);
@@ -67,9 +67,12 @@ public class BaseX{
 		}
 	}
 	//Sets the numeric base
-	private void setBase(int base) throws InvalidBaseException{
-		if(base <= 0){
-			throw new InvalidBaseException("Base cannot be a negative number");
+	protected void setBase(int base) throws InvalidBaseException{
+		if(base < Character.MIN_RADIX){
+			throw new InvalidBaseException("Base cannot be less than " + Character.MIN_RADIX);
+		}
+		else if(base > Character.MAX_RADIX){
+			throw new InvalidBaseException("Base cannot be larger than " + Character.MAX_RADIX);
 		}
 
 		logger.debug("Setting base {}", base);
@@ -77,7 +80,7 @@ public class BaseX{
 		this.base = base;
 	}
 	//Encode inputString, store it in outputString, and return it
-	private String encode(){
+	protected String encode(){
 		logger.debug("Encoding");
 
 		//Encode every character in inputString
@@ -101,7 +104,7 @@ public class BaseX{
 		return outputString;
 	}
 	//Decode inputString, store it in outputString, and return it
-	private String decode() throws InvalidCharacterException{
+	protected String decode() throws InvalidCharacterException{
 		logger.debug("Decoding");
 
 		//Decode every binary number in the string
@@ -114,8 +117,8 @@ public class BaseX{
 			logger.debug("Decoded number {}", num);
 
 			//Make sure it is in a valid range
-			if((num < 0) && (num > 255)){
-				throw new InvalidCharacterException("The base" + base + " string '" + baseXString + "' is not a valid character");
+			if((num < 0) || (num > 255)){
+				throw new InvalidCharacterException("The base" + base + " string '" + baseXString + "' is not a valid ASCII character");
 			}
 
 			//Convert the int to a char and save it
@@ -123,8 +126,8 @@ public class BaseX{
 		}
 
 		//Save the output
-		logger.debug("Saving output string '{}'", output);
 		outputString = output.toString();
+		logger.debug("Saving output string '{}'", outputString);
 
 		//Return the output
 		return outputString;

src/main/java/com/mattrixwv/cipherstream/monosubstitution/Beaufort.java

@@ -1,7 +1,7 @@
 //CipherStreamJava/src/main/java/com/mattrixwv/CipherStreamJava/monoSubstitution/Beaufort.java
 //Mattrixwv
 // Created: 02-23-22
-//Modified: 07-09-22
+//Modified: 04-16-23
 package com.mattrixwv.cipherstream.monosubstitution;
 
 
@@ -13,19 +13,19 @@ import com.mattrixwv.cipherstream.exceptions.InvalidKeywordException;
 
 
 public class Beaufort{
-	private static final Logger logger = LoggerFactory.getLogger(Beaufort.class);
+	protected static Logger logger = LoggerFactory.getLogger(Beaufort.class);
 
 	//Fields
-	private String inputString;	//This is the string that needs encoded/decoded
-	private String outputString;	//This is the string that is output after encoding/decoding
-	private String keyword;		//This is the keyword that is responsible for determining the offsets that you change each character by
-	private boolean preserveCapitals;	//Whether to respect capitals in the output string
-	private boolean preserveWhitespace;	//Whether to respect whitespace in the output string
-	private boolean preserveSymbols;	//Whether to respect symbols in the output string
+	protected String inputString;	//This is the string that needs encoded/decoded
+	protected String outputString;	//This is the string that is output after encoding/decoding
+	protected String keyword;		//This is the keyword that is responsible for determining the offsets that you change each character by
+	protected boolean preserveCapitals;	//Whether to respect capitals in the output string
+	protected boolean preserveWhitespace;	//Whether to respect whitespace in the output string
+	protected boolean preserveSymbols;	//Whether to respect symbols in the output string
 	//Internal ciphers
-	private Atbash atbash;		//The first step in encoding/decoding the cipher
-	private Caesar caesar;		//The second step in encoding/decoding the cipher
-	private Vigenere vigenere;	//The third step in encoding/decoding the cipher
+	protected Atbash atbash;		//The first step in encoding/decoding the cipher
+	protected Caesar caesar;		//The second step in encoding/decoding the cipher
+	protected Vigenere vigenere;	//The third step in encoding/decoding the cipher
 
 	//Ensures inputString constraints
 	public void setInputString(String inputString) throws InvalidInputException{
@@ -88,9 +88,20 @@ public class Beaufort{
 		}
 	}
 	//Encodes the inputString and stores the result in outputString
-	public void encode() throws InvalidKeywordException, InvalidInputException{
+	protected void encode() throws InvalidKeywordException, InvalidInputException{
 		logger.debug("Encoding");
 
+		code();
+	}
+	//Decodes the inputString and stores the result in outputString
+	protected void decode() throws InvalidKeywordException, InvalidInputException{
+		logger.debug("Decoding");
+
+		//Decoding is just encoding again
+		code();
+	}
+	//Codes input and saves to output
+	protected void code(){
 		//Reverse the string
 		logger.debug("Encoding with Atbash");
 		String atbashString = atbash.encode(inputString);
@@ -106,13 +117,6 @@ public class Beaufort{
 		logger.debug("Saving output string '{}'", vigenereString);
 		this.outputString = vigenereString;
 	}
-	//Decodes the inputString and stores the result in outputString
-	public void decode() throws InvalidKeywordException, InvalidInputException{
-		logger.debug("Decoding");
-
-		//Decoding is just encoding again
-		encode();
-	}
 
 
 	//Constructor

src/main/java/com/mattrixwv/cipherstream/monosubstitution/Caesar.java

@@ -1,7 +1,7 @@
 //CipherStreamJava/src/main/java/com/mattrixwv/CipherStreamJava/monoSubstitution/Caesar.java
 //Matthew Ellison
 // Created: 07-25-21
-//Modified: 07-09-22
+//Modified: 04-16-23
 package com.mattrixwv.cipherstream.monosubstitution;
 
 
@@ -12,18 +12,18 @@ import com.mattrixwv.cipherstream.exceptions.InvalidInputException;
 
 
 public class Caesar{
-	private static final Logger logger = LoggerFactory.getLogger(Caesar.class);
+	protected static Logger logger = LoggerFactory.getLogger(Caesar.class);
 
 	//Fields
-	private String inputString;		//The string that needs encoded/decoded
-	private String outputString;	//The encoded/decoded string
-	private int shift;	//The amount that you need to shift each letter
-	private boolean preserveCapitals;	//Whether to respect capitals in the output string
-	private boolean preserveWhitespace;	//Whether to respect whitespace in the output string
-	private boolean preserveSymbols;	//Whether to respect symbols in the output string
+	protected String inputString;	//The string that needs encoded/decoded
+	protected String outputString;	//The encoded/decoded string
+	protected int shift;	//The amount that you need to shift each letter
+	protected boolean preserveCapitals;	//Whether to respect capitals in the output string
+	protected boolean preserveWhitespace;	//Whether to respect whitespace in the output string
+	protected boolean preserveSymbols;	//Whether to respect symbols in the output string
 
 	//Sets shift and makes sure it is within the propper bounds
-	private void setShift(int shiftAmount){
+	protected void setShift(int shiftAmount){
 		logger.debug("Setting shift {}", shiftAmount);
 
 		//If you shift more than 26 you will just be wrapping back around again
@@ -32,9 +32,9 @@ public class Caesar{
 		logger.debug("Cleaned shift {}", shift);
 	}
 	//Sets the input string
-	private void setInputString(String inputString) throws InvalidInputException{
+	protected void setInputString(String inputString) throws InvalidInputException{
 		if(inputString == null){
-			throw new NullPointerException("Input cannot be null");
+			throw new InvalidInputException("Input cannot be null");
 		}
 
 		logger.debug("Original input string '{}'", inputString);
@@ -63,7 +63,7 @@ public class Caesar{
 		}
 	}
 	//Encodes the inputString and stores the result in outputString
-	private String encode(){
+	protected String encode(){
 		logger.debug("Encoding");
 
 		StringBuilder output = new StringBuilder();
@@ -107,12 +107,12 @@ public class Caesar{
 			output.append(currentChar);
 		}
 
-		logger.debug("Saving encoded string '{}'", output);
 		outputString = output.toString();
+		logger.debug("Saving encoded string '{}'", outputString);
 		return outputString;
 	}
 	//Decodes the inputString and stores the result in outputString
-	private String decode(){
+	protected String decode(){
 		logger.debug("Decoding");
 
 		StringBuilder output = new StringBuilder();
@@ -156,11 +156,12 @@ public class Caesar{
 			}
 			//If it is whitespace, number, or punctuation just let it pass through
 			//Add it to the output string
+			logger.debug("Decoded character {}", currentChar);
 			output.append(currentChar);
 		}
 
-		logger.debug("Saving decoded string '{}'", output);
 		outputString = output.toString();
+		logger.debug("Saving decoded string '{}'", outputString);
 		return outputString;
 	}
 

src/main/java/com/mattrixwv/cipherstream/monosubstitution/Vigenere.java

@@ -16,7 +16,7 @@ import com.mattrixwv.cipherstream.exceptions.InvalidKeywordException;
 
 
 public class Vigenere{
-	private static final Logger logger = LoggerFactory.getLogger(Vigenere.class);
+	protected static Logger logger = LoggerFactory.getLogger(Vigenere.class);
 
 	//Fields
 	protected String inputString;	//This is the string that needs encoded/decoded

src/main/java/com/mattrixwv/cipherstream/polysubstitution/PolybiusSquare.java

@@ -15,7 +15,7 @@ import com.mattrixwv.cipherstream.exceptions.InvalidInputException;
 
 
 public class PolybiusSquare{
-	private static final Logger logger = LoggerFactory.getLogger(PolybiusSquare.class);
+	protected static final Logger logger = LoggerFactory.getLogger(PolybiusSquare.class);
 
 	//A class representing the location of a character in the grid
 	protected class CharLocation{

src/test/java/com/mattrixwv/cipherstream/combination/TestADFGVX.java

@@ -1,450 +1,293 @@
 //CipherStreamJava/src/test/java/com/mattrixwv/CipherStreamJava/combination/TestADFGVX.java
 //Mattrixwv
 // Created: 01-26-22
-//Modified: 07-09-22
+//Modified: 04-14-23
 package com.mattrixwv.cipherstream.combination;
 
 
 import static org.junit.jupiter.api.Assertions.assertEquals;
+import static org.junit.jupiter.api.Assertions.assertFalse;
+import static org.junit.jupiter.api.Assertions.assertNotNull;
+import static org.junit.jupiter.api.Assertions.assertNotSame;
+import static org.junit.jupiter.api.Assertions.assertThrows;
+import static org.junit.jupiter.api.Assertions.assertTrue;
+import static org.mockito.ArgumentMatchers.anyChar;
+import static org.mockito.ArgumentMatchers.anyString;
+import static org.mockito.ArgumentMatchers.eq;
+import static org.mockito.Mockito.mock;
+import static org.mockito.Mockito.never;
+import static org.mockito.Mockito.times;
+import static org.mockito.Mockito.verify;
 
+import org.junit.jupiter.api.BeforeEach;
 import org.junit.jupiter.api.Test;
+import org.slf4j.Logger;
 
-import com.mattrixwv.cipherstream.exceptions.InvalidCharacterException;
+import com.mattrixwv.cipherstream.combination.ADFGVX.LargePolybiusSquare;
 import com.mattrixwv.cipherstream.exceptions.InvalidInputException;
 import com.mattrixwv.cipherstream.exceptions.InvalidKeywordException;
+import com.mattrixwv.cipherstream.polysubstitution.Columnar;
 
 
 public class TestADFGVX{
-	@Test
-	public void testEncode() throws InvalidCharacterException, InvalidKeywordException, InvalidInputException{
-		ADFGVX cipher = new ADFGVX(true, true, true);
+	private ADFGVX cipher;
+	private Logger logger;
+	//Variables
+	private String encodedString = "Message to^encode";
+	private String encodedStringClean = "MESSAGETOENCODE";
+	private String decodedString = "AXgvdavfxgagfa afag^aaxdxfgdagda";
+	private String decodedStringClean = "AXGVDAVFXGAGFAAFAGAAXDXFGDAGDA";
+	private String keyword = "keyword";
+	private String squareKeyword = "SquareKeyword";
 
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String squareKeyword = "SquareKeyword";
-		String keyword = "keyword";
-		String correctOutput = "axgvdavfxgagfaafagaaxdxfgdagda";
-		String output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "AXGVDAVFXGAGFAAFAGAAXDXFGDAGDA";
-		output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
 
-		//Test whitespace encoding
-		inputString = "message to encode";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "axgvdavfxgagfa afag aaxdxfgdagda";
-		output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "axgvdavfxgagfa*afag+aaxdxfgdagda";
-		output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol encoding
-		inputString = "Message to-encode";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "AXgvdavfxgagfa afag-aaxdxfgdagda";
-		output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-	}
-	@Test
-	public void testNoCapitalEncode() throws InvalidCharacterException, InvalidKeywordException, InvalidInputException{
-		ADFGX cipher = new ADFGX(false, true, true);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String squareKeyword = "SquareKeyword";
-		String keyword = "keyword";
-		String correctOutput = "AAGAGADFAGAXXDAXDXADAFAFXDDGDF";
-		String output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "AAGAGADFAGAXXDAXDXADAFAFXDDGDF";
-		output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "message to encode";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "AAGAGADFAGAXXD AXDX ADAFAFXDDGDF";
-		output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode-";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "AAGAGADFAGAXXD*AXDX+ADAFAFXDDGDF-";
-		output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol encoding
-		inputString = "Message to^encode";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "AAGAGADFAGAXXD AXDX^ADAFAFXDDGDF";
-		output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-	}
-	@Test
-	public void testNoWhitespaceEncode() throws InvalidCharacterException, InvalidKeywordException, InvalidInputException{
-		ADFGX cipher = new ADFGX(true, false, true);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String squareKeyword = "SquareKeyword";
-		String keyword = "keyword";
-		String correctOutput = "aagagadfagaxxdaxdxadafafxddgdf";
-		String output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "AAGAGADFAGAXXDAXDXADAFAFXDDGDF";
-		output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "message to encode";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "aagagadfagaxxdaxdxadafafxddgdf";
-		output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode-";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "aagagadfagaxxd*axdx+adafafxddgdf-";
-		output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol encoding
-		inputString = "Message to^encode";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "AAgagadfagaxxdaxdx^adafafxddgdf";
-		output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-	}
-	@Test
-	public void testNoSymbolEncode() throws InvalidCharacterException, InvalidKeywordException, InvalidInputException{
-		ADFGX cipher = new ADFGX(true, true, false);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String squareKeyword = "SquareKeyword";
-		String keyword = "keyword";
-		String correctOutput = "aagagadfagaxxdaxdxadafafxddgdf";
-		String output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "AAGAGADFAGAXXDAXDXADAFAFXDDGDF";
-		output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "message to encode";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "aagagadfagaxxd axdx adafafxddgdf";
-		output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode-";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "aagagadfagaxxdaxdxadafafxddgdf";
-		output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol encoding
-		inputString = "Message to^encode";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "AAgagadfagaxxd axdxadafafxddgdf";
-		output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-	}
-	@Test
-	public void testNoCapitalWhitespaceSymbolEncode() throws InvalidCharacterException, InvalidKeywordException, InvalidInputException{
-		ADFGX cipher = new ADFGX(false, false, false);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String squareKeyword = "SquareKeyword";
-		String keyword = "keyword";
-		String correctOutput = "AAGAGADFAGAXXDAXDXADAFAFXDDGDF";
-		String output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "AAGAGADFAGAXXDAXDXADAFAFXDDGDF";
-		output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "message to encode";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "AAGAGADFAGAXXDAXDXADAFAFXDDGDF";
-		output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode-";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "AAGAGADFAGAXXDAXDXADAFAFXDDGDF";
-		output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol encoding
-		inputString = "Message to^encode";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "AAGAGADFAGAXXDAXDXADAFAFXDDGDF";
-		output = cipher.encode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
+	@BeforeEach
+	public void setup(){
+		cipher = new ADFGVX();
+		logger = mock(Logger.class);
+		ADFGVX.logger = logger;
 	}
 
 
 	@Test
-	public void testDecode() throws InvalidCharacterException, InvalidKeywordException, InvalidInputException{
-		ADFGVX cipher = new ADFGVX(true, true, true);
+	public void testSquareKeyword(){
+		assertThrows(InvalidKeywordException.class, () -> {
+			cipher.setSquareKeyword(null);
+		});
+		assertEquals("", cipher.squareKeyword);
+		verify(logger, never()).debug(anyString(), anyString());
 
-		//Test lowercase decoding
-		String inputString = "axgvdavfxgagfaafagaaxdxfgdagda";
-		String squareKeyword = "SquareKeyword";
-		String keyword = "keyword";
-		String correctOutput = "messagetoencode";
-		String output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "AXGVDAVFXGAGFAAFAGAAXDXFGDAGDA";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace decoding
-		inputString = "axgvdavfxgagfa afag aaxdxfgdagda";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "message to encode";
-		output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "axgvdavfxgagfa*afag+aaxdxfgdagda-";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "message*to+encode-";
-		output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol decoding
-		inputString = "AXgvdavfxgagfa afag^aaxdxfgdagda";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "Message to^encode";
-		output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
+		cipher.setSquareKeyword(squareKeyword);
+		assertEquals(squareKeyword, cipher.squareKeyword);
+		verify(logger, times(1)).debug("squareKeyword = {}", squareKeyword);
 	}
+
 	@Test
-	public void testNoCapitalDecode() throws InvalidCharacterException, InvalidKeywordException, InvalidInputException{
-		ADFGVX cipher = new ADFGVX(false, true, true);
+	public void testSetKeyword(){
+		assertThrows(InvalidKeywordException.class, () -> {
+			cipher.setKeyword(null);
+		});
+		assertEquals("", cipher.keyword);
+		verify(logger, never()).debug(anyString(), anyString());
 
-		//Test lowercase decoding
-		String inputString = "axgvdavfxgagfaafagaaxdxfgdagda";
-		String squareKeyword = "SquareKeyword";
 		String keyword = "keyword";
-		String correctOutput = "MESSAGETOENCODE";
-		String output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "AXGVDAVFXGAGFAAFAGAAXDXFGDAGDA";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace decoding
-		inputString = "axgvdavfxgagfa afag aaxdxfgdagda";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "MESSAGE TO ENCODE";
-		output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "axgvdavfxgagfa*afag+aaxdxfgdagda-";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "MESSAGE*TO+ENCODE-";
-		output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol decoding
-		inputString = "AXgvdavfxgagfa afag^aaxdxfgdagda";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "MESSAGE TO^ENCODE";
-		output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
+		cipher.setKeyword(keyword);
+		assertEquals(keyword, cipher.keyword);
+		verify(logger, times(1)).debug("keyword = {}", keyword);
 	}
+
 	@Test
-	public void testNoWhitespaceDecode() throws InvalidCharacterException, InvalidKeywordException, InvalidInputException{
-		ADFGVX cipher = new ADFGVX(true, false, true);
+	public void testSetInputString(){
+		//Null input
+		assertThrows(InvalidInputException.class, () -> {
+			cipher.setInputString(null);
+		});
+		assertEquals("", cipher.inputString);
+		verify(logger, never()).debug(anyString(), anyString());
 
-		//Test lowercase decoding
-		String inputString = "axgvdavfxgagfaafagaaxdxfgdagda";
-		String squareKeyword = "SquareKeyword";
-		String keyword = "keyword";
-		String correctOutput = "messagetoencode";
-		String output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "AXGVDAVFXGAGFAAFAGAAXDXFGDAGDA";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
+		String originalInputString = "Original input string '{}'";
+		String cleanedInputString = "Cleaned input string '{}'";
 
-		//Test whitespace decoding
-		inputString = "axgvdavfxgagfa afag aaxdxfgdagda";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "messagetoencode";
-		output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
+		//Blank input
+		cipher.preserveCapitals = true;
+		cipher.preserveSymbols = true;
+		cipher.preserveWhitespace = true;
+		assertThrows(InvalidInputException.class, () -> {
+			cipher.setInputString("");
+		});
+		assertEquals("", cipher.inputString);
+		verify(logger, times(1)).debug(originalInputString, "");
 
-		//Test symbol decoding
-		inputString = "axgvdavfxgagfa*afag+aaxdxfgdagda-";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "message*to+encode-";
-		output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
+		//No options
+		String inputString = "input String*";
+		cipher.setInputString(inputString);
+		assertEquals(inputString, cipher.inputString);
+		verify(logger, times(1)).debug(originalInputString, inputString);
+		verify(logger, times(1)).debug(cleanedInputString, inputString);
 
-		//Test mixed case, whitespace, and symbol decoding
-		inputString = "AXgvdavfxgagfa afag^aaxdxfgdagda";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "Messageto^encode";
-		output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
+		//capitals
+		cipher.preserveCapitals = false;
+		cipher.preserveWhitespace = true;
+		cipher.preserveSymbols = true;
+		inputString = "input String*";
+		cipher.setInputString(inputString);
+		assertEquals(inputString.toUpperCase(), cipher.inputString);
+		verify(logger, times(2)).debug(originalInputString, inputString);
+		verify(logger, times(1)).debug("Removing capitals");
+		verify(logger, times(1)).debug(cleanedInputString, inputString.toUpperCase());
+
+		//whitespace
+		cipher.preserveCapitals = true;
+		cipher.preserveWhitespace = false;
+		cipher.preserveSymbols = true;
+		inputString = "input String*";
+		cipher.setInputString(inputString);
+		assertEquals(inputString.replaceAll("\\s", ""), cipher.inputString);
+		verify(logger, times(3)).debug(originalInputString, inputString);
+		verify(logger, times(1)).debug("Removing whitespace");
+		verify(logger, times(1)).debug(cleanedInputString, inputString.replaceAll("\\s", ""));
+
+		//symbols
+		cipher.preserveCapitals = true;
+		cipher.preserveWhitespace = true;
+		cipher.preserveSymbols = false;
+		inputString = "input String*";
+		cipher.setInputString(inputString);
+		assertEquals(inputString.replaceAll("[^a-zA-Z\\s]", ""), cipher.inputString);
+		verify(logger, times(4)).debug(originalInputString, inputString);
+		verify(logger, times(1)).debug("Removing symbols");
+		verify(logger, times(1)).debug(cleanedInputString, inputString.replaceAll("[^a-zA-Z\\s]", ""));
 	}
+
 	@Test
-	public void testNoSymbolDecode() throws InvalidCharacterException, InvalidKeywordException, InvalidInputException{
-		ADFGVX cipher = new ADFGVX(true, true, false);
+	public void testFormateOutputStringEncode(){
+		cipher.inputString = encodedString;
+		cipher.outputString = decodedStringClean;
 
-		//Test lowercase decoding
-		String inputString = "axgvdavfxgagfaafagaaxdxfgdagda";
-		String squareKeyword = "SquareKeyword";
-		String keyword = "keyword";
-		String correctOutput = "messagetoencode";
-		String output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "AXGVDAVFXGAGFAAFAGAAXDXFGDAGDA";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace decoding
-		inputString = "axgvdavfxgagfa afag aaxdxfgdagda";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "message to encode";
-		output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "axgvdavfxgagfa*afag+aaxdxfgdagda-";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "messagetoencode";
-		output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol decoding
-		inputString = "AXgvdavfxgagfa afag^aaxdxfgdagda";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "Message toencode";
-		output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
+		cipher.formatOutputStringEncode();
+		assertEquals(decodedString, cipher.outputString);
+		verify(logger, times(1)).debug("Formatting output string to match input string");
+		verify(logger, times(17)).debug(eq("Input character {}"), anyChar());
+		verify(logger, times(1)).debug("Converting output to uppercase");
+		verify(logger, times(14)).debug("Converting output to lowercase");
+		verify(logger, times(2)).debug("Appending symbol to output");
+		verify(logger, times(1)).debug("Saving output string '{}'", decodedString);
 	}
+
 	@Test
-	public void testNoCapitalWhitespaceSymbolDecode() throws InvalidCharacterException, InvalidKeywordException, InvalidInputException{
-		ADFGVX cipher = new ADFGVX(false, false, false);
+	public void testFormatOutputStringDecode(){
+		cipher.outputString = encodedStringClean;
+		cipher.inputString = decodedString;
 
-		//Test lowercase decoding
-		String inputString = "axgvdavfxgagfaafagaaxdxfgdagda";
-		String squareKeyword = "SquareKeyword";
-		String keyword = "keyword";
-		String correctOutput = "MESSAGETOENCODE";
-		String output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "AXGVDAVFXGAGFAAFAGAAXDXFGDAGDA";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
+		cipher.formatOutputStringDecode();
+		assertEquals(encodedString, cipher.outputString);
+		verify(logger, times(1)).debug("Formatting output string to match input string");
+		verify(logger, times(17)).debug(eq("Input character {}"), anyChar());
+		verify(logger, times(1)).debug("Converting output to uppercase");
+		verify(logger, times(14)).debug("Converting output to lowercase");
+		verify(logger, times(2)).debug("Appending symbol to output");
+		verify(logger, times(1)).debug("Saving output string '{}'", encodedString);
+	}
 
-		//Test whitespace decoding
-		inputString = "axgvdavfxgagfa afag aaxdxfgdagda";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
+	@Test
+	public void testEncode(){
+		cipher.inputString = encodedString;
+		cipher.keyword = keyword;
+		cipher.squareKeyword = squareKeyword;
 
-		//Test symbol decoding
-		inputString = "axgvdavfxgagfa*afag+aaxdxfgdagda-";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
+		cipher.encode();
 
-		//Test mixed case, whitespace, and symbol decoding
-		inputString = "AXgvdavfxgagfa afag^aaxdxfgdagda";
-		squareKeyword = "SquareKeyword";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(squareKeyword, keyword, inputString);
-		assertEquals(correctOutput, output);
+		assertEquals(decodedString, cipher.outputString);
+		verify(logger, times(1)).debug("Encoding using Polybius Square");
+		verify(logger, times(1)).debug("Replacing coordinates with letters");
+		verify(logger, times(1)).debug("Encoding using columnar");
+	}
+
+	@Test
+	public void testDecode(){
+		cipher.inputString = decodedString;
+		cipher.keyword = keyword;
+		cipher.squareKeyword = squareKeyword;
+
+		cipher.decode();
+
+		assertEquals(encodedString, cipher.outputString);
+		verify(logger, times(1)).debug("Decoding using columnar");
+		verify(logger, times(1)).debug("Replacing letters with coordinates");
+		verify(logger, times(1)).debug("Decoding using Polybius Square");
+	}
+
+	@Test
+	public void testConstructors(){
+		cipher = new ADFGVX();
+		assertFalse(cipher.preserveCapitals);
+		assertFalse(cipher.preserveWhitespace);
+		assertFalse(cipher.preserveSymbols);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals("", cipher.squareKeyword);
+		assertEquals("", cipher.squareKeyword);
+		assertNotNull(cipher.largePolybiusSquare);
+		assertNotNull(cipher.columnar);
+
+		cipher = new ADFGVX(true, false, false);
+		assertTrue(cipher.preserveCapitals);
+		assertFalse(cipher.preserveSymbols);
+		assertFalse(cipher.preserveWhitespace);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals("", cipher.squareKeyword);
+		assertEquals("", cipher.squareKeyword);
+		assertNotNull(cipher.largePolybiusSquare);
+		assertNotNull(cipher.columnar);
+
+		cipher = new ADFGVX(false, true, false);
+		assertFalse(cipher.preserveCapitals);
+		assertFalse(cipher.preserveSymbols);
+		assertTrue(cipher.preserveWhitespace);
+
+		cipher = new ADFGVX(false, false, true);
+		assertFalse(cipher.preserveCapitals);
+		assertTrue(cipher.preserveSymbols);
+		assertFalse(cipher.preserveWhitespace);
+	}
+
+	@Test
+	public void testGetters(){
+		cipher.inputString = encodedString;
+		cipher.outputString = decodedString;
+		cipher.squareKeyword = squareKeyword;
+		cipher.keyword = keyword;
+
+		assertEquals(encodedString, cipher.getInputString());
+		assertEquals(decodedString, cipher.getOutputString());
+		assertEquals(squareKeyword, cipher.getSquareKeyword());
+		assertEquals(keyword, cipher.getKeyword());
+	}
+
+	@Test
+	public void testReset(){
+		LargePolybiusSquare ps = cipher.largePolybiusSquare;
+		Columnar columnar = cipher.columnar;
+		cipher.inputString = encodedString;
+		cipher.outputString = decodedString;
+		cipher.squareKeyword = squareKeyword;
+		cipher.keyword = keyword;
+
+		cipher.reset();
+
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals("", cipher.squareKeyword);
+		assertEquals("", cipher.keyword);
+		assertNotSame(ps, cipher.largePolybiusSquare);
+		assertNotSame(columnar, cipher.columnar);
+		verify(logger, times(1)).debug("Resetting fields");
+	}
+
+	@Test
+	public void testPracticalEncoding(){
+		//Test as original
+		cipher = new ADFGVX(true, true, true);
+		String output = cipher.encode(squareKeyword, keyword, encodedString);
+		assertEquals(decodedString, output);
+
+		//Test fully cleaned
+		cipher = new ADFGVX(false, false, false);
+		output = cipher.encode(squareKeyword, keyword, encodedString);
+		assertEquals(decodedStringClean, output);
+	}
+
+	@Test
+	public void testPracticalDecoding(){
+		//Test as original
+		cipher = new ADFGVX(true, true, true);
+		String output = cipher.decode(squareKeyword, keyword, decodedString);
+		assertEquals(encodedString, output);
+
+		//Test fully cleaned
+		cipher = new ADFGVX(false, false, false);
+		output = cipher.decode(squareKeyword, keyword, decodedString);
+		assertEquals(encodedStringClean, output);
 	}
 }

src/test/java/com/mattrixwv/cipherstream/combination/TestADFGX.java

@@ -6,8 +6,14 @@ package com.mattrixwv.cipherstream.combination;
 
 
 import static org.junit.jupiter.api.Assertions.assertEquals;
+import static org.junit.jupiter.api.Assertions.assertFalse;
+import static org.junit.jupiter.api.Assertions.assertNotNull;
+import static org.junit.jupiter.api.Assertions.assertNotSame;
 import static org.junit.jupiter.api.Assertions.assertThrows;
+import static org.junit.jupiter.api.Assertions.assertTrue;
+import static org.mockito.ArgumentMatchers.anyChar;
 import static org.mockito.ArgumentMatchers.anyString;
+import static org.mockito.ArgumentMatchers.eq;
 import static org.mockito.Mockito.mock;
 import static org.mockito.Mockito.never;
 import static org.mockito.Mockito.times;
@@ -15,23 +21,29 @@ import static org.mockito.Mockito.verify;
 
 import org.junit.jupiter.api.BeforeEach;
 import org.junit.jupiter.api.Test;
-import org.junit.jupiter.api.extension.ExtendWith;
-import org.mockito.junit.jupiter.MockitoExtension;
 import org.slf4j.Logger;
 
 import com.mattrixwv.cipherstream.exceptions.InvalidInputException;
 import com.mattrixwv.cipherstream.exceptions.InvalidKeywordException;
+import com.mattrixwv.cipherstream.polysubstitution.Columnar;
+import com.mattrixwv.cipherstream.polysubstitution.PolybiusSquare;
 
 
-@ExtendWith(MockitoExtension.class)
 public class TestADFGX{
 	private ADFGX cipher;
 	private Logger logger;
+	//Variables
+	private String decodedString = "Message to^encode";
+	private String decodedStringClean = "MESSAGETOENCODE";
+	private String encodedString = "AAgagadfagaxxd axdx^adafafxddgdf";
+	private String encodedStringClean = "AAGAGADFAGAXXDAXDXADAFAFXDDGDF";
+	private String keyword = "keyword";
+	private String squareKeyword = "SquareKeyword";
 
 
 	@BeforeEach
 	public void setup(){
-		cipher = new ADFGX();
+		cipher = new ADFGX(true, true, true);
 		logger = mock(Logger.class);
 		ADFGX.logger = logger;
 	}
@@ -45,7 +57,6 @@ public class TestADFGX{
 		assertEquals("", cipher.squareKeyword);
 		verify(logger, never()).debug(anyString(), anyString());
 
-		String squareKeyword = "squareKeyword";
 		cipher.setSquareKeyword(squareKeyword);
 		assertEquals(squareKeyword, cipher.squareKeyword);
 		verify(logger, times(1)).debug("squareKeyword = {}", squareKeyword);
@@ -74,8 +85,8 @@ public class TestADFGX{
 		assertEquals("", cipher.inputString);
 		verify(logger, never()).debug(anyString(), anyString());
 
-		String originalInputString = "original input string '{}'";
-		String cleanedInputString = "cleaned input string '{}'";
+		String originalInputString = "Original input string '{}'";
+		String cleanedInputString = "Cleaned input string '{}'";
 
 		//Blank input
 		cipher.preserveCapitals = true;
@@ -130,70 +141,153 @@ public class TestADFGX{
 
 	@Test
 	public void testFormatOutputStringEncode(){
-		//TODO:
+		cipher.inputString = decodedString;
+		cipher.outputString = encodedStringClean;
+
+		cipher.formatOutputStringEncode();
+		assertEquals(encodedString, cipher.outputString);
+		verify(logger, times(1)).debug("Formatting output string to match input string");
+		verify(logger, times(17)).debug(eq("Input character {}"), anyChar());
+		verify(logger, times(1)).debug("Converting output to uppercase");
+		verify(logger, times(14)).debug("Converting output to lowercase");
+		verify(logger, times(2)).debug("Appending symbol to output");
+		verify(logger, times(1)).debug("Saving output string '{}'", encodedString);
 	}
 
 	@Test
-	public void formatOutputStringDecode(){
-		//TODO:
+	public void testFormatOutputStringDecode(){
+		cipher.outputString = decodedStringClean;
+		cipher.inputString = encodedString;
+
+		cipher.formatOutputStringDecode();
+		assertEquals(decodedString, cipher.outputString);
+		verify(logger, times(1)).debug("Formatting output string to match input string");
+		verify(logger, times(17)).debug(eq("Input character {}"), anyChar());
+		verify(logger, times(1)).debug("Converting output to uppercase");
+		verify(logger, times(14)).debug("Converting output to lowercase");
+		verify(logger, times(2)).debug("Appending symbol to output");
+		verify(logger, times(1)).debug("Saving output string '{}'", decodedString);
 	}
 
 	@Test
-	public void testEncodePrivate(){
-		//TODO:
+	public void testEncode(){
+		cipher.inputString = decodedString;
+		cipher.keyword = keyword;
+		cipher.squareKeyword = squareKeyword;
+
+		cipher.encode();
+
+		assertEquals(encodedString, cipher.outputString);
+		verify(logger, times(1)).debug("Encoding using Polybius Square");
+		verify(logger, times(1)).debug("Replacing coordinates with letters");
+		verify(logger, times(1)).debug("Encoding using columnar");
 	}
 
 	@Test
-	public void testDecodePrivate(){
-		//TODO:
+	public void testDecode(){
+		cipher.inputString = encodedString;
+		cipher.keyword = keyword;
+		cipher.squareKeyword = squareKeyword;
+
+		cipher.decode();
+
+		assertEquals(decodedString, cipher.outputString);
+		verify(logger, times(1)).debug("Decoding using columnar");
+		verify(logger, times(1)).debug("Replacing letters with coordinates");
+		verify(logger, times(1)).debug("Decoding using Polybius Square");
 	}
 
 	@Test
 	public void testConstructors(){
-		//TODO:
+		cipher = new ADFGX();
+		assertFalse(cipher.preserveCapitals);
+		assertFalse(cipher.preserveWhitespace);
+		assertFalse(cipher.preserveSymbols);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals("", cipher.squareKeyword);
+		assertEquals("", cipher.squareKeyword);
+		assertNotNull(cipher.polybiusSquare);
+		assertNotNull(cipher.columnar);
+
+		cipher = new ADFGX(true, false, false);
+		assertTrue(cipher.preserveCapitals);
+		assertFalse(cipher.preserveSymbols);
+		assertFalse(cipher.preserveWhitespace);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals("", cipher.squareKeyword);
+		assertEquals("", cipher.squareKeyword);
+		assertNotNull(cipher.polybiusSquare);
+		assertNotNull(cipher.columnar);
+
+		cipher = new ADFGX(false, true, false);
+		assertFalse(cipher.preserveCapitals);
+		assertFalse(cipher.preserveSymbols);
+		assertTrue(cipher.preserveWhitespace);
+
+		cipher = new ADFGX(false, false, true);
+		assertFalse(cipher.preserveCapitals);
+		assertTrue(cipher.preserveSymbols);
+		assertFalse(cipher.preserveWhitespace);
 	}
 
 	@Test
 	public void testGetters(){
-		//TODO:
+		cipher.inputString = decodedString;
+		cipher.outputString = encodedString;
+		cipher.squareKeyword = squareKeyword;
+		cipher.keyword = keyword;
+
+		assertEquals(decodedString, cipher.getInputString());
+		assertEquals(encodedString, cipher.getOutputString());
+		assertEquals(squareKeyword, cipher.getSquareKeyword());
+		assertEquals(keyword, cipher.getKeyword());
 	}
 
 	@Test
 	public void testReset(){
-		//TODO:
+		PolybiusSquare polybius = cipher.polybiusSquare;
+		Columnar columnar = cipher.columnar;
+		cipher.inputString = decodedString;
+		cipher.outputString = encodedString;
+		cipher.squareKeyword = squareKeyword;
+		cipher.keyword = keyword;
+
+		cipher.reset();
+
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals("", cipher.squareKeyword);
+		assertEquals("", cipher.keyword);
+		assertNotSame(polybius, cipher.polybiusSquare);
+		assertNotSame(columnar, cipher.columnar);
+		verify(logger, times(1)).debug("Resetting fields");
 	}
 
 	@Test
 	public void testPracticalEncoding(){
 		//Test as original
-		cipher.preserveCapitals = true;
-		cipher.preserveWhitespace = true;
-		cipher.preserveSymbols = true;
-		String output = cipher.encode("SquareKeyword", "keyword", "Message to^encode");
-		assertEquals("AAgagadfagaxxd axdx^adafafxddgdf", output);
+		cipher = new ADFGX(true, true, true);
+		String output = cipher.encode(squareKeyword, keyword, decodedString);
+		assertEquals(encodedString, output);
 
 		//Test fully cleaned
-		cipher.preserveCapitals = false;
-		cipher.preserveWhitespace = false;
-		cipher.preserveSymbols = false;
-		output = cipher.encode("SquareKeyword", "keyword", "Message to^encode");
-		assertEquals("AAGAGADFAGAXXDAXDXADAFAFXDDGDF", output);
+		cipher = new ADFGX(false, false, false);
+		output = cipher.encode(squareKeyword, keyword, decodedString);
+		assertEquals(encodedStringClean, output);
 	}
 
 	@Test
 	public void testPracticalDecoding(){
 		//Test as original
-		cipher.preserveCapitals = true;
-		cipher.preserveWhitespace = true;
-		cipher.preserveSymbols = true;
-		String output = cipher.decode("SquareKeyword", "keyword", "AAgagadfagaxxd axdx^adafafxddgdf");
-		assertEquals("Message to^encode", output);
+		cipher = new ADFGX(true, true, true);
+		String output = cipher.decode(squareKeyword, keyword, encodedString);
+		assertEquals(decodedString, output);
 
 		//Test fully cleaned
-		cipher.preserveCapitals = false;
-		cipher.preserveWhitespace = false;
-		cipher.preserveSymbols = false;
-		output = cipher.decode("SquareKeyword", "keyword", "AAgagadfagaxxd axdx^adafafxddgdf");
-		assertEquals("MESSAGETOENCODE", output);
+		cipher = new ADFGX(false, false, false);
+		output = cipher.decode(squareKeyword, keyword, encodedString);
+		assertEquals(decodedStringClean, output);
 	}
 }

src/test/java/com/mattrixwv/cipherstream/monosubstitution/TestAffine.java

@@ -1,449 +1,342 @@
 //CipherStreamJava/src/test/java/com/mattrixwv/CipherStreamJava/polySubstitution/TestAffine.java
 //Mattrixwv
 // Created: 01-26-22
-//Modified: 07-09-22
+//Modified: 04-15-23
 package com.mattrixwv.cipherstream.monosubstitution;
 
 
 import static org.junit.jupiter.api.Assertions.assertEquals;
+import static org.junit.jupiter.api.Assertions.assertFalse;
+import static org.junit.jupiter.api.Assertions.assertThrows;
+import static org.junit.jupiter.api.Assertions.assertTrue;
+import static org.mockito.ArgumentMatchers.anyChar;
+import static org.mockito.ArgumentMatchers.anyInt;
+import static org.mockito.ArgumentMatchers.anyString;
+import static org.mockito.ArgumentMatchers.eq;
+import static org.mockito.Mockito.mock;
+import static org.mockito.Mockito.never;
+import static org.mockito.Mockito.times;
+import static org.mockito.Mockito.verify;
 
+import org.junit.jupiter.api.BeforeEach;
 import org.junit.jupiter.api.Test;
+import org.slf4j.Logger;
 
 import com.mattrixwv.cipherstream.exceptions.InvalidInputException;
 import com.mattrixwv.cipherstream.exceptions.InvalidKeywordException;
 
 
 public class TestAffine{
-	@Test
-	public void testEncode() throws InvalidKeywordException, InvalidInputException{
-		Affine cipher = new Affine(true, true, true);
+	private Affine cipher;
+	private Logger logger;
+	//Variables
+	private String decodedString = "Message to^encode";
+	private String decodedStringClean = "messagetoencode";
+	private String encodedString = "Pbtthlb yz^burzwb";
+	private String encodedStringClean = "pbtthlbyzburzwb";
+	private int key1 = 5;
+	private int key2 = 7;
 
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		int key1 = 5;
-		int key2 = 7;
-		String correctOutput = "pbtthlbyzburzwb";
-		String output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "PBTTHLBYZBURZWB";
-		output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
 
-		//Test whitespace encoding
-		inputString = "message to encode";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "pbtthlb yz burzwb";
-		output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode-";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "pbtthlb*yz+burzwb-";
-		output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol encoding
-		inputString = "Message to^encode";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "Pbtthlb yz^burzwb";
-		output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-	}
-	@Test
-	public void testNoCapitalEncode() throws InvalidKeywordException, InvalidInputException{
-		Affine cipher = new Affine(false, true, true);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		int key1 = 5;
-		int key2 = 7;
-		String correctOutput = "pbtthlbyzburzwb";
-		String output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "pbtthlbyzburzwb";
-		output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "message to encode";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "pbtthlb yz burzwb";
-		output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode-";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "pbtthlb*yz+burzwb-";
-		output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol encoding
-		inputString = "Message to^encode";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "pbtthlb yz^burzwb";
-		output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-	}
-	@Test
-	public void testNoWhitespaceEncode() throws InvalidKeywordException, InvalidInputException{
-		Affine cipher = new Affine(true, false, true);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		int key1 = 5;
-		int key2 = 7;
-		String correctOutput = "pbtthlbyzburzwb";
-		String output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "PBTTHLBYZBURZWB";
-		output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "message to encode";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "pbtthlbyzburzwb";
-		output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode-";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "pbtthlb*yz+burzwb-";
-		output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol encoding
-		inputString = "Message to^encode";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "Pbtthlbyz^burzwb";
-		output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-	}
-	@Test
-	public void testNoSymbolEncode() throws InvalidKeywordException, InvalidInputException{
-		Affine cipher = new Affine(true, true, false);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		int key1 = 5;
-		int key2 = 7;
-		String correctOutput = "pbtthlbyzburzwb";
-		String output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "PBTTHLBYZBURZWB";
-		output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "message to encode";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "pbtthlb yz burzwb";
-		output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode-";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "pbtthlbyzburzwb";
-		output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol encoding
-		inputString = "Message to^encode";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "Pbtthlb yzburzwb";
-		output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-	}
-	@Test
-	public void testNoCapitalWhitespaceSymbolEncode() throws InvalidKeywordException, InvalidInputException{
-		Affine cipher = new Affine(false, false, false);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		int key1 = 5;
-		int key2 = 7;
-		String correctOutput = "pbtthlbyzburzwb";
-		String output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "pbtthlbyzburzwb";
-		output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "message to encode";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "pbtthlbyzburzwb";
-		output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode-";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "pbtthlbyzburzwb";
-		output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol encoding
-		inputString = "Message to^encode";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "pbtthlbyzburzwb";
-		output = cipher.encode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
+	@BeforeEach
+	public void setup(){
+		cipher = new Affine();
+		logger = mock(Logger.class);
+		Affine.logger = logger;
 	}
 
 
 	@Test
-	public void testDecode() throws InvalidKeywordException, InvalidInputException{
-		Affine cipher = new Affine(true, true, true);
-
-		//Test lowercase decoding
-		String inputString = "pbtthlbyzburzwb";
-		int key1 = 5;
-		int key2 = 7;
-		String correctOutput = "messagetoencode";
-		String output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppsercase decoding
-		inputString = "PBTTHLBYZBURZWB";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace decoding
-		inputString = "pbtthlb yz burzwb";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "message to encode";
-		output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "pbtthlb*yz+burzwb-";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "message*to+encode-";
-		output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol decoding
-		inputString = "Pbtthlb yz^burzwb";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "Message to^encode";
-		output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
+	public void testConstructor_default(){
+		cipher = new Affine();
+		assertFalse(cipher.preserveCapitals);
+		assertFalse(cipher.preserveSymbols);
+		assertFalse(cipher.preserveWhitespace);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals(0, cipher.key1);
+		assertEquals(0, cipher.key2);
 	}
+
 	@Test
-	public void testNoCapitalDecode() throws InvalidKeywordException, InvalidInputException{
-		Affine cipher = new Affine(false, true, true);
+	public void testConstructor_preserves(){
+		cipher = new Affine(true, false, false);
+		assertTrue(cipher.preserveCapitals);
+		assertFalse(cipher.preserveSymbols);
+		assertFalse(cipher.preserveWhitespace);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals(0, cipher.key1);
+		assertEquals(0, cipher.key2);
 
-		//Test lowercase decoding
-		String inputString = "pbtthlbyzburzwb";
-		int key1 = 5;
-		int key2 = 7;
-		String correctOutput = "messagetoencode";
-		String output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppsercase decoding
-		inputString = "PBTTHLBYZBURZWB";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "messagetoencode";
-		output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
+		cipher = new Affine(false, true, false);
+		assertFalse(cipher.preserveCapitals);
+		assertFalse(cipher.preserveSymbols);
+		assertTrue(cipher.preserveWhitespace);
 
-		//Test whitespace decoding
-		inputString = "pbtthlb yz burzwb";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "message to encode";
-		output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "pbtthlb*yz+burzwb-";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "message*to+encode-";
-		output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol decoding
-		inputString = "Pbtthlb yz^burzwb";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "message to^encode";
-		output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
+		cipher = new Affine(false, false, true);
+		assertFalse(cipher.preserveCapitals);
+		assertTrue(cipher.preserveSymbols);
+		assertFalse(cipher.preserveWhitespace);
 	}
+
 	@Test
-	public void testNoWhitespaceDecode() throws InvalidKeywordException, InvalidInputException{
-		Affine cipher = new Affine(true, false, true);
-
-		//Test lowercase decoding
-		String inputString = "pbtthlbyzburzwb";
-		int key1 = 5;
-		int key2 = 7;
-		String correctOutput = "messagetoencode";
-		String output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppsercase decoding
-		inputString = "PBTTHLBYZBURZWB";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace decoding
-		inputString = "pbtthlb yz burzwb";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "messagetoencode";
-		output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "pbtthlb*yz+burzwb-";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "message*to+encode-";
-		output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol decoding
-		inputString = "Pbtthlb yz^burzwb";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "Messageto^encode";
-		output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
+	public void testKey1(){
+		cipher.setKey1(key1);
+		assertEquals(key1, cipher.key1);
+		verify(logger, times(1)).debug("Setting key1 {}", key1);
+		verify(logger, times(1)).debug("Cleaned key1 {}", key1);
+		verify(logger, times(2)).debug(anyString(), anyInt());
+		verify(logger, never()).debug(anyString(), anyString());
+		verify(logger, never()).debug(anyString());
 	}
+
 	@Test
-	public void testNoSymbolDecode() throws InvalidKeywordException, InvalidInputException{
-		Affine cipher = new Affine(true, true, false);
-
-		//Test lowercase decoding
-		String inputString = "pbtthlbyzburzwb";
-		int key1 = 5;
-		int key2 = 7;
-		String correctOutput = "messagetoencode";
-		String output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppsercase decoding
-		inputString = "PBTTHLBYZBURZWB";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace decoding
-		inputString = "pbtthlb yz burzwb";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "message to encode";
-		output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "pbtthlb*yz+burzwb-";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "messagetoencode";
-		output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol decoding
-		inputString = "Pbtthlb yz^burzwb";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "Message toencode";
-		output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
+	public void testSetKey1_notPrime(){
+		assertThrows(InvalidKeywordException.class, () -> {
+			cipher.setKey1(2);
+		});
+		verify(logger, times(1)).debug("Setting key1 {}", 2);
+		verify(logger, never()).debug("Cleaned key1 {}", 2);
+		verify(logger, times(1)).debug(anyString(), anyInt());
+		verify(logger, never()).debug(anyString(), anyString());
+		verify(logger, never()).debug(anyString());
 	}
+
 	@Test
-	public void testNoCapitalWhitespaceSymbolDecode() throws InvalidKeywordException, InvalidInputException{
-		Affine cipher = new Affine(false, false, false);
+	public void testSetKey1_negative(){
+		cipher.setKey1(-27);
+		assertEquals(25, cipher.key1);
+		verify(logger, times(1)).debug("Setting key1 {}", -27);
+		verify(logger, times(1)).debug("Cleaned key1 {}", 25);
+		verify(logger, times(2)).debug(anyString(), anyInt());
+		verify(logger, never()).debug(anyString(), anyString());
+		verify(logger, never()).debug(anyString());
+	}
 
-		//Test lowercase decoding
-		String inputString = "pbtthlbyzburzwb";
-		int key1 = 5;
-		int key2 = 7;
-		String correctOutput = "messagetoencode";
-		String output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppsercase decoding
-		inputString = "PBTTHLBYZBURZWB";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "messagetoencode";
-		output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
+	@Test
+	public void testSetKey1_large(){
+		cipher.setKey1(key1 + 26);
+		assertEquals(key1, cipher.key1);
+		verify(logger, times(1)).debug("Setting key1 {}", key1 + 26);
+		verify(logger, times(1)).debug("Cleaned key1 {}", key1);
+		verify(logger, times(2)).debug(anyString(), anyInt());
+		verify(logger, never()).debug(anyString(), anyString());
+		verify(logger, never()).debug(anyString());
+	}
 
-		//Test whitespace decoding
-		inputString = "pbtthlb yz burzwb";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "messagetoencode";
-		output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
+	@Test
+	public void testSetKey2(){
+		cipher.setKey2(key2);
+		assertEquals(key2, cipher.key2);
+		verify(logger, times(1)).debug("Setting key2 {}", key2);
+		verify(logger, times(1)).debug("Cleaned key2 {}", key2);
+		verify(logger, times(2)).debug(anyString(), anyInt());
+		verify(logger, never()).debug(anyString(), anyString());
+		verify(logger, never()).debug(anyString());
+	}
 
-		//Test symbol decoding
-		inputString = "pbtthlb*yz+burzwb-";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "messagetoencode";
-		output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
+	@Test
+	public void testSetKey2_negative(){
+		cipher.setKey2(-27);
+		assertEquals(25, cipher.key2);
+		verify(logger, times(1)).debug("Setting key2 {}", -27);
+		verify(logger, times(1)).debug("Cleaned key2 {}", cipher.key2);
+		verify(logger, times(2)).debug(anyString(), anyInt());
+		verify(logger, never()).debug(anyString(), anyString());
+		verify(logger, never()).debug(anyString());
+	}
 
-		//Test mixed case, whitespace, symbol decoding
-		inputString = "Pbtthlb yz^burzwb";
-		key1 = 5;
-		key2 = 7;
-		correctOutput = "messagetoencode";
-		output = cipher.decode(key1, key2, inputString);
-		assertEquals(correctOutput, output);
+	@Test
+	public void testSetKey2_large(){
+		cipher.setKey2(key2 + 26);
+		assertEquals(key2, cipher.key2);
+		verify(logger, times(1)).debug("Setting key2 {}", key2 + 26);
+		verify(logger, times(1)).debug("Cleaned key2 {}", key2);
+		verify(logger, times(2)).debug(anyString(), anyInt());
+		verify(logger, never()).debug(anyString(), anyString());
+		verify(logger, never()).debug(anyString());
+	}
+
+	@Test
+	public void testSetInputString(){
+		cipher.preserveCapitals = true;
+		cipher.preserveSymbols = true;
+		cipher.preserveWhitespace = true;
+
+		cipher.setInputString(decodedString);
+
+		assertEquals(decodedString, cipher.inputString);
+		verify(logger, times(1)).debug("Original input string '{}'", decodedString);
+		verify(logger, times(1)).debug("Cleaned input string '{}'", decodedString);
+		verify(logger, times(2)).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetInputString_noCapitals(){
+		cipher.preserveCapitals = false;
+		cipher.preserveSymbols = true;
+		cipher.preserveWhitespace = true;
+
+		cipher.setInputString(decodedString);
+
+		assertEquals(decodedString.toLowerCase(), cipher.inputString);
+		verify(logger, times(1)).debug("Original input string '{}'", decodedString);
+		verify(logger, times(1)).debug("Removing case");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", decodedString.toLowerCase());
+		verify(logger, times(2)).debug(anyString(), anyString());
+		verify(logger, times(1)).debug(anyString());
+	}
+
+	@Test
+	public void testSetInputString_noWhitespace(){
+		cipher.preserveCapitals = true;
+		cipher.preserveSymbols = true;
+		cipher.preserveWhitespace = false;
+
+		cipher.setInputString(decodedString);
+
+		assertEquals(decodedString.replaceAll("\\s", ""), cipher.inputString);
+		verify(logger, times(1)).debug("Original input string '{}'", decodedString);
+		verify(logger, times(1)).debug("Removing whitespace");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", decodedString.replaceAll("\\s", ""));
+		verify(logger, times(2)).debug(anyString(), anyString());
+		verify(logger, times(1)).debug(anyString());
+	}
+
+	@Test
+	public void testSetInputString_noSymbols(){
+		cipher.preserveCapitals = true;
+		cipher.preserveSymbols = false;
+		cipher.preserveWhitespace = true;
+
+		cipher.setInputString(decodedString);
+
+		assertEquals(decodedString.replaceAll("[^a-zA-Z\\s]", ""), cipher.inputString);
+		verify(logger, times(1)).debug("Original input string '{}'", decodedString);
+		verify(logger, times(1)).debug("Removing symbols");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", decodedString.replaceAll("[^a-zA-Z\\s]", ""));
+		verify(logger, times(2)).debug(anyString(), anyString());
+		verify(logger, times(1)).debug(anyString());
+	}
+
+	@Test
+	public void testSetInputString_null(){
+		cipher.preserveCapitals = true;
+		cipher.preserveSymbols = true;
+		cipher.preserveWhitespace = true;
+
+		assertThrows(InvalidInputException.class, () -> {
+			cipher.setInputString(null);
+		});
+		verify(logger, never()).debug(anyString());
+		verify(logger, never()).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetInputString_blank(){
+		cipher.preserveCapitals = true;
+		cipher.preserveSymbols = true;
+		cipher.preserveWhitespace = true;
+
+		assertThrows(InvalidInputException.class, () -> {
+			cipher.setInputString("");
+		});
+		verify(logger, times(1)).debug("Original input string '{}'", "");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", "");
+		verify(logger, times(2)).debug(anyString(), anyString());
+		verify(logger, never()).debug(anyString());
+	}
+
+	@Test
+	public void testEncode(){
+		cipher.preserveCapitals = true;
+		cipher.preserveWhitespace = true;
+		cipher.preserveSymbols = true;
+		cipher.inputString = decodedString;
+		cipher.key1 = key1;
+		cipher.key2 = key2;
+
+		cipher.encode();
+
+		assertEquals(encodedString, cipher.outputString);
+		verify(logger, times(1)).debug("Encoding");
+		verify(logger, times(17)).debug(eq("Current char {}"), anyChar());
+		verify(logger, times(15)).debug(eq("Encoded char {}"), anyChar());
+		verify(logger, times(1)).debug("Saving output string '{}'", encodedString);
+	}
+
+	@Test
+	public void testDecode(){
+		cipher.preserveCapitals = true;
+		cipher.preserveSymbols = true;
+		cipher.preserveWhitespace = true;
+		cipher.inputString = encodedString;
+		cipher.key1 = key1;
+		cipher.key2 = key2;
+
+		cipher.decode();
+
+		assertEquals(decodedString, cipher.outputString);
+		verify(logger, times(1)).debug("Decoding");
+		verify(logger, times(1)).debug("Key1 inverse {}", 21);
+		verify(logger, times(17)).debug(eq("Current char {}"), anyChar());
+		verify(logger, times(15)).debug(eq("Decoded char {}"), anyChar());
+		verify(logger, times(1)).debug("Saving output string '{}'", decodedString);
+	}
+
+	@Test
+	public void testGetters(){
+		cipher.inputString = decodedString;
+		cipher.outputString = encodedString;
+		cipher.key1 = key1;
+		cipher.key2 = key2;
+
+		assertEquals(decodedString, cipher.getInputString());
+		assertEquals(encodedString, cipher.getOutputString());
+		assertEquals(key1, cipher.getKey1());
+		assertEquals(key2, cipher.getKey2());
+	}
+
+	@Test
+	public void testReset(){
+		cipher.inputString = decodedString;
+		cipher.outputString = encodedString;
+		cipher.key1 = key1;
+		cipher.key2 = key2;
+
+		cipher.reset();
+
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals(0, cipher.key1);
+		assertEquals(0, cipher.key2);
+		verify(logger, times(1)).debug("Resetting fields");
+	}
+
+	@Test
+	public void testPracticalEncoding(){
+		//Test as original
+		cipher = new Affine(true, true, true);
+		String output = cipher.encode(key1, key2, decodedString);
+		assertEquals(encodedString, output);
+
+		//Test fully cleaned
+		cipher = new Affine(false, false, false);
+		output = cipher.encode(key1, key2, decodedString);
+		assertEquals(encodedStringClean, output);
+	}
+
+	@Test
+	public void testPracticalDecoding(){
+		//Test as original
+		cipher = new Affine(true, true, true);
+		String output = cipher.decode(key1, key2, encodedString);
+		assertEquals(decodedString, output);
+
+		//Test fully cleaned
+		cipher = new Affine(false, false, false);
+		output = cipher.decode(key1, key2, encodedString);
+		assertEquals(decodedStringClean, output);
 	}
 }

src/test/java/com/mattrixwv/cipherstream/monosubstitution/TestAtbash.java

@@ -1,356 +1,224 @@
 //CipherStreamJava/src/test/java/com/mattrixwv/CipherStreamJava/monoSubstitution/TestAtbash.java
 //Mattrixwv
 // Created: 07-25-21
-//Modified: 07-09-22
+//Modified: 04-15-23
 package com.mattrixwv.cipherstream.monosubstitution;
 
 
 import static org.junit.jupiter.api.Assertions.assertEquals;
+import static org.junit.jupiter.api.Assertions.assertFalse;
+import static org.junit.jupiter.api.Assertions.assertThrows;
+import static org.junit.jupiter.api.Assertions.assertTrue;
+import static org.mockito.ArgumentMatchers.anyString;
+import static org.mockito.Mockito.mock;
+import static org.mockito.Mockito.never;
+import static org.mockito.Mockito.times;
+import static org.mockito.Mockito.verify;
 
+import org.junit.jupiter.api.BeforeEach;
 import org.junit.jupiter.api.Test;
+import org.slf4j.Logger;
 
 import com.mattrixwv.cipherstream.exceptions.InvalidInputException;
 
 
 public class TestAtbash{
-	@Test
-	public void testEncode() throws InvalidInputException{
-		Atbash cipher = new Atbash(true, true, true);
+	private Atbash cipher;
+	private Logger logger;
+	//Variables
+	private String decodedString = "Message to^encode";
+	private String decodedStringClean = "MESSAGETOENCODE";
+	private String encodedString = "Nvhhztv gl^vmxlwv";
+	private String encodedStringClean = "NVHHZTVGLVMXLWV";
 
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String correctOutput = "nvhhztvglvmxlwv";
-		String output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		correctOutput = "NVHHZTVGLVMXLWV";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
 
-		//Test whitespace encoding
-		inputString = "message to encode";
-		correctOutput = "nvhhztv gl vmxlwv";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode";
-		correctOutput = "nvhhztv*gl+vmxlwv";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol encoding
-		inputString = "Message to^encode";
-		correctOutput = "Nvhhztv gl^vmxlwv";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-	}
-
-	@Test
-	public void testNoCapitalEncode() throws InvalidInputException{
-		Atbash cipher = new Atbash(false, true, true);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String correctOutput = "NVHHZTVGLVMXLWV";
-		String output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		correctOutput = "NVHHZTVGLVMXLWV";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "message to encode";
-		correctOutput = "NVHHZTV GL VMXLWV";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode";
-		correctOutput = "NVHHZTV*GL+VMXLWV";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol encoding
-		inputString = "Message to^encode";
-		correctOutput = "NVHHZTV GL^VMXLWV";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-	}
-
-	@Test
-	public void testNoWhitespaceEncode() throws InvalidInputException{
-		Atbash cipher = new Atbash(true, false, true);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String correctOutput = "nvhhztvglvmxlwv";
-		String output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		correctOutput = "NVHHZTVGLVMXLWV";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "message to encode";
-		correctOutput = "nvhhztvglvmxlwv";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode";
-		correctOutput = "nvhhztv*gl+vmxlwv";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol encoding
-		inputString = "Message to^encode";
-		correctOutput = "Nvhhztvgl^vmxlwv";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-	}
-
-	@Test
-	public void testNoSymbolEncode() throws InvalidInputException{
-		Atbash cipher = new Atbash(true, true, false);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String correctOutput = "nvhhztvglvmxlwv";
-		String output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		correctOutput = "NVHHZTVGLVMXLWV";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "message to encode";
-		correctOutput = "nvhhztv gl vmxlwv";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode";
-		correctOutput = "nvhhztvglvmxlwv";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol encoding
-		inputString = "Message to^encode";
-		correctOutput = "Nvhhztv glvmxlwv";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-	}
-
-	@Test
-	public void testNoCapitalWhitespaceSymbolEncode() throws InvalidInputException{
-		Atbash cipher = new Atbash(false, false, false);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String correctOutput = "NVHHZTVGLVMXLWV";
-		String output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		correctOutput = "NVHHZTVGLVMXLWV";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "message to encode";
-		correctOutput = "NVHHZTVGLVMXLWV";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode";
-		correctOutput = "NVHHZTVGLVMXLWV";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol encoding
-		inputString = "Message to^encode";
-		correctOutput = "NVHHZTVGLVMXLWV";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
+	@BeforeEach
+	public void setup(){
+		cipher = new Atbash();
+		logger = mock(Logger.class);
+		Atbash.logger = logger;
 	}
 
 
 	@Test
-	public void testDecode() throws InvalidInputException{
-		Atbash cipher = new Atbash(true, true, true);
-
-		//Test lowercase decoding
-		String inputString = "nvhhztvglvmxlwv";
-		String correctOutput = "messagetoencode";
-		String output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "NVHHZTVGLVMXLWV";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace decoding
-		inputString = "nvhhztv gl vmxlwv";
-		correctOutput = "message to encode";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "nvhhztv*gl+vmxlwv";
-		correctOutput = "message*to+encode";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol decoding
-		inputString = "Nvhhztv gl^vmxlwv";
-		correctOutput = "Message to^encode";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
+	public void testConstructor_default(){
+		cipher = new Atbash();
+		assertFalse(cipher.preserveCapitals);
+		assertFalse(cipher.preserveWhitespace);
+		assertFalse(cipher.preserveSymbols);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
 	}
 
 	@Test
-	public void testNoCapitalDecode() throws InvalidInputException{
-		Atbash cipher = new Atbash(false, true, true);
+	public void testConstructor_preserves(){
+		cipher = new Atbash(true, false, false);
+		assertTrue(cipher.preserveCapitals);
+		assertFalse(cipher.preserveWhitespace);
+		assertFalse(cipher.preserveSymbols);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
 
-		//Test lowercase decoding
-		String inputString = "nvhhztvglvmxlwv";
-		String correctOutput = "MESSAGETOENCODE";
-		String output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "NVHHZTVGLVMXLWV";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
+		cipher = new Atbash(false, true, false);
+		assertFalse(cipher.preserveCapitals);
+		assertTrue(cipher.preserveWhitespace);
+		assertFalse(cipher.preserveSymbols);
 
-		//Test whitespace decoding
-		inputString = "nvhhztv gl vmxlwv";
-		correctOutput = "MESSAGE TO ENCODE";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "nvhhztv*gl+vmxlwv";
-		correctOutput = "MESSAGE*TO+ENCODE";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol decoding
-		inputString = "Nvhhztv gl^vmxlwv";
-		correctOutput = "MESSAGE TO^ENCODE";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
+		cipher = new Atbash(false, false, true);
+		assertFalse(cipher.preserveCapitals);
+		assertFalse(cipher.preserveWhitespace);
+		assertTrue(cipher.preserveSymbols);
 	}
 
 	@Test
-	public void testNoWhitespaceDecode() throws InvalidInputException{
-		Atbash cipher = new Atbash(true, false, true);
+	public void testEncode(){
+		cipher.inputString = decodedString;
+		cipher.outputString = encodedString;
 
-		//Test lowercase decoding
-		String inputString = "nvhhztvglvmxlwv";
-		String correctOutput = "messagetoencode";
-		String output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "NVHHZTVGLVMXLWV";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace decoding
-		inputString = "nvhhztv gl vmxlwv";
-		correctOutput = "messagetoencode";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "nvhhztv*gl+vmxlwv";
-		correctOutput = "message*to+encode";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol decoding
-		inputString = "Nvhhztv gl^vmxlwv";
-		correctOutput = "Messageto^encode";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
+		assertEquals(decodedString, cipher.inputString);
+		assertEquals(encodedString, cipher.outputString);
 	}
 
 	@Test
-	public void testNoSymbolDecode() throws InvalidInputException{
-		Atbash cipher = new Atbash(true, true, false);
+	public void testSetInputString(){
+		cipher.preserveCapitals = true;
+		cipher.preserveSymbols = true;
+		cipher.preserveWhitespace = true;
 
-		//Test lowercase decoding
-		String inputString = "nvhhztvglvmxlwv";
-		String correctOutput = "messagetoencode";
-		String output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "NVHHZTVGLVMXLWV";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
+		cipher.setInputString(decodedString);
 
-		//Test whitespace decoding
-		inputString = "nvhhztv gl vmxlwv";
-		correctOutput = "message to encode";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "nvhhztv*gl+vmxlwv";
-		correctOutput = "messagetoencode";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol decoding
-		inputString = "Nvhhztv gl^vmxlwv";
-		correctOutput = "Message toencode";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
+		assertEquals(decodedString, cipher.inputString);
+		verify(logger, times(1)).debug("Original input string '{}'", decodedString);
+		verify(logger, times(1)).debug("Cleaned input string '{}'", decodedString);
+		verify(logger, times(2)).debug(anyString(), anyString());
+		verify(logger, never()).debug(anyString());
 	}
 
 	@Test
-	public void testNoCapitalWhitespaceSymbolDecode() throws InvalidInputException{
-		Atbash cipher = new Atbash(false, false, false);
+	public void testSetInputString_noCapitals(){
+		cipher.preserveCapitals = false;
+		cipher.preserveSymbols = true;
+		cipher.preserveWhitespace = true;
 
-		//Test lowercase decoding
-		String inputString = "nvhhztvglvmxlwv";
-		String correctOutput = "MESSAGETOENCODE";
-		String output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "NVHHZTVGLVMXLWV";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
+		cipher.setInputString(decodedString);
 
-		//Test whitespace decoding
-		inputString = "nvhhztv gl vmxlwv";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
+		assertEquals(decodedString.toUpperCase(), cipher.inputString);
+		verify(logger, times(1)).debug("Original input string '{}'", decodedString);
+		verify(logger, times(1)).debug("Removing case");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", decodedString.toUpperCase());
+		verify(logger, times(2)).debug(anyString(), anyString());
+		verify(logger, times(1)).debug(anyString());
+	}
 
-		//Test symbol decoding
-		inputString = "nvhhztv*gl+vmxlwv";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
+	@Test
+	public void testSetInputString_noWhitespace(){
+		cipher.preserveCapitals = true;
+		cipher.preserveSymbols = true;
+		cipher.preserveWhitespace = false;
 
-		//Test mixed case, whitespace, and symbol decoding
-		inputString = "Nvhhztv gl^vmxlwv";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
+		cipher.setInputString(decodedString);
+
+		assertEquals(decodedString.replaceAll("\\s", ""), cipher.inputString);
+		verify(logger, times(1)).debug("Original input string '{}'", decodedString);
+		verify(logger, times(1)).debug("Removing whitespace");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", decodedString.replaceAll("\\s", ""));
+		verify(logger, times(2)).debug(anyString(), anyString());
+		verify(logger, times(1)).debug(anyString());
+	}
+
+	@Test
+	public void testSetInputString_noSymbols(){
+		cipher.preserveCapitals = true;
+		cipher.preserveSymbols = false;
+		cipher.preserveWhitespace = true;
+
+		cipher.setInputString(decodedString);
+
+		assertEquals(decodedString.replaceAll("[^a-zA-Z\\s]", ""), cipher.inputString);
+		verify(logger, times(1)).debug("Original input string '{}'", decodedString);
+		verify(logger, times(1)).debug("Removing symbols");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", decodedString.replaceAll("[^a-zA-Z\\s]", ""));
+		verify(logger, times(2)).debug(anyString(), anyString());
+		verify(logger, times(1)).debug(anyString());
+	}
+
+	@Test
+	public void testSetInputString_null(){
+		cipher.preserveCapitals = true;
+		cipher.preserveSymbols = true;
+		cipher.preserveWhitespace = true;
+
+		assertThrows(InvalidInputException.class, () -> {
+			cipher.setInputString(null);
+		});
+
+		assertEquals("", cipher.inputString);
+		verify(logger, never()).debug(anyString(), anyString());
+		verify(logger, never()).debug(anyString());
+	}
+
+	@Test
+	public void testSetInputString_blank(){
+		cipher.preserveCapitals = true;
+		cipher.preserveSymbols = true;
+		cipher.preserveWhitespace = true;
+		cipher.inputString = decodedString;
+
+		assertThrows(InvalidInputException.class, () -> {
+			cipher.setInputString("");
+		});
+
+		assertEquals("", cipher.inputString);
+		verify(logger, times(1)).debug("Original input string '{}'", "");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", "");
+		verify(logger, times(2)).debug(anyString(), anyString());
+		verify(logger, never()).debug(anyString());
+	}
+
+	@Test
+	public void testGetters(){
+		cipher.inputString = decodedString;
+		cipher.outputString = encodedString;
+
+		assertEquals(decodedString, cipher.getInputString());
+		assertEquals(encodedString, cipher.getOutputString());
+	}
+
+	@Test
+	public void testReset(){
+		cipher.inputString = decodedString;
+		cipher.outputString = encodedString;
+
+		cipher.reset();
+
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		verify(logger, times(1)).debug("Resetting fields");
+	}
+
+	@Test
+	public void testPracticalEncoding(){
+		//Test as original
+		cipher = new Atbash(true, true, true);
+		String output = cipher.encode(decodedString);
+		assertEquals(encodedString, output);
+
+		//Test fully cleaned
+		cipher = new Atbash(false, false, false);
+		output = cipher.encode(decodedString);
+		assertEquals(encodedStringClean, output);
+	}
+
+	@Test
+	public void testPracticalDecoding(){
+		//Test as original
+		cipher = new Atbash(true, true, true);
+		String output = cipher.decode(encodedString);
+		assertEquals(decodedString, output);
+
+		//Test fully cleaned
+		cipher = new Atbash(false, false, false);
+		output = cipher.decode(encodedString);
+		assertEquals(decodedStringClean, output);
 	}
 }

src/test/java/com/mattrixwv/cipherstream/monosubstitution/TestAutokey.java

@@ -1,413 +1,198 @@
 //CipherStreamJava/src/test/java/com/mattrixwv/CipherStreamJava/monoSubstitution/TestAutokey.java
 //Mattrixwv
 // Created: 07-26-21
-//Modified: 07-09-22
+//Modified: 04-15-23
 package com.mattrixwv.cipherstream.monosubstitution;
 
 
 import static org.junit.jupiter.api.Assertions.assertEquals;
+import static org.junit.jupiter.api.Assertions.assertFalse;
+import static org.junit.jupiter.api.Assertions.assertTrue;
+import static org.mockito.ArgumentMatchers.anyChar;
+import static org.mockito.ArgumentMatchers.anyString;
+import static org.mockito.ArgumentMatchers.eq;
+import static org.mockito.Mockito.mock;
+import static org.mockito.Mockito.times;
+import static org.mockito.Mockito.verify;
 
+import java.util.ArrayList;
+import java.util.List;
+
+import org.junit.jupiter.api.BeforeEach;
 import org.junit.jupiter.api.Test;
+import org.slf4j.Logger;
 
-import com.mattrixwv.cipherstream.exceptions.InvalidInputException;
 import com.mattrixwv.cipherstream.exceptions.InvalidKeywordException;
 
 
 public class TestAutokey{
-	@Test
-	public void testEncode() throws InvalidKeywordException, InvalidInputException{
-		Autokey cipher = new Autokey(true, true, true);
+	private Autokey cipher;
+	private Logger logger;
+	//Variables
+	private String decodedString = "MeSsage to^encode";
+	private String decodedStringClean = "MESSAGETOENCODE";
+	private String encodedString = "WiQooxh fs^wfcuhx";
+	private String encodedStringClean = "WIQOOXHFSWFCUHX";
+	private String keyword = "keyword";
+	private ArrayList<Integer> offset = new ArrayList<>(List.of(10, 4, 24, 22, 14, 17, 3, 12, 4, 18, 18, 0, 6, 4, 19));
 
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String keyword = "keyword";
-		String correctOutput = "wiqooxhfswfcuhx";
-		String output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		keyword = "keyword";
-		correctOutput = "WIQOOXHFSWFCUHX";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
 
-		//Test whitespace encoding
-		inputString = "message to encode";
-		keyword = "keyword";
-		correctOutput = "wiqooxh fs wfcuhx";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode";
-		keyword = "keyword";
-		correctOutput = "wiqooxh*fs+wfcuhx";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol encoding
-		inputString = "Message to^encode";
-		keyword = "keyword";
-		correctOutput = "Wiqooxh fs^wfcuhx";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-	}
-
-	@Test
-	public void testNoCapitalEncode() throws InvalidKeywordException, InvalidInputException{
-		Autokey cipher = new Autokey(false, true, true);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String keyword = "keyword";
-		String correctOutput = "WIQOOXHFSWFCUHX";
-		String output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		keyword = "keyword";
-		correctOutput = "WIQOOXHFSWFCUHX";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "message to encode";
-		keyword = "keyword";
-		correctOutput = "WIQOOXH FS WFCUHX";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode";
-		keyword = "keyword";
-		correctOutput = "WIQOOXH*FS+WFCUHX";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol encoding
-		inputString = "Message to^encode";
-		keyword = "keyword";
-		correctOutput = "WIQOOXH FS^WFCUHX";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-	}
-
-	@Test
-	public void testNoWhitespaceEncode() throws InvalidKeywordException, InvalidInputException{
-		Autokey cipher = new Autokey(true, false, true);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String keyword = "keyword";
-		String correctOutput = "wiqooxhfswfcuhx";
-		String output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		keyword = "keyword";
-		correctOutput = "WIQOOXHFSWFCUHX";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "message to encode";
-		keyword = "keyword";
-		correctOutput = "wiqooxhfswfcuhx";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode";
-		keyword = "keyword";
-		correctOutput = "wiqooxh*fs+wfcuhx";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol encoding
-		inputString = "Message to^encode";
-		keyword = "keyword";
-		correctOutput = "Wiqooxhfs^wfcuhx";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-	}
-
-	@Test
-	public void testNoSymbolEncode() throws InvalidKeywordException, InvalidInputException{
-		Autokey cipher = new Autokey(true, true, false);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String keyword = "keyword";
-		String correctOutput = "wiqooxhfswfcuhx";
-		String output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		keyword = "keyword";
-		correctOutput = "WIQOOXHFSWFCUHX";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "message to encode";
-		keyword = "keyword";
-		correctOutput = "wiqooxh fs wfcuhx";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode";
-		keyword = "keyword";
-		correctOutput = "wiqooxhfswfcuhx";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol encoding
-		inputString = "Message to^encode";
-		keyword = "keyword";
-		correctOutput = "Wiqooxh fswfcuhx";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-	}
-
-	@Test
-	public void testNoCapitalWhitespaceSymbolEncode() throws InvalidKeywordException, InvalidInputException{
-		Autokey cipher = new Autokey(false, false, false);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String keyword = "keyword";
-		String correctOutput = "WIQOOXHFSWFCUHX";
-		String output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		keyword = "keyword";
-		correctOutput = "WIQOOXHFSWFCUHX";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "message to encode";
-		keyword = "keyword";
-		correctOutput = "WIQOOXHFSWFCUHX";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode";
-		keyword = "keyword";
-		correctOutput = "WIQOOXHFSWFCUHX";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol encoding
-		inputString = "Message to^encode";
-		keyword = "keyword";
-		correctOutput = "WIQOOXHFSWFCUHX";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
+	@BeforeEach
+	public void setup(){
+		cipher = new Autokey();
+		logger = mock(Logger.class);
+		Autokey.logger = logger;
 	}
 
 
 	@Test
-	public void testDecode() throws InvalidKeywordException, InvalidInputException{
-		Autokey cipher = new Autokey(true, true, true);
-
-		//Test lowercase decoding
-		String inputString = "wiqooxhfswfcuhx";
-		String keyword = "keyword";
-		String correctOutput = "messagetoencode";
-		String output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "WIQOOXHFSWFCUHX";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace decoding
-		inputString = "wiqooxh fs wfcuhx";
-		keyword = "keyword";
-		correctOutput = "message to encode";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "wiqooxh*fs+wfcuhx";
-		keyword = "keyword";
-		correctOutput = "message*to+encode";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol decoding
-		inputString = "Wiqooxh fs^wfcuhx";
-		keyword = "keyword";
-		correctOutput = "Message to^encode";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
+	public void testConstructor_default(){
+		cipher = new Autokey();
+		assertFalse(cipher.preserveCapitals);
+		assertFalse(cipher.preserveWhitespace);
+		assertFalse(cipher.preserveSymbols);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals("", cipher.keyword);
+		assertEquals(0, cipher.offset.size());
 	}
 
 	@Test
-	public void testNoCapitalDecode() throws InvalidKeywordException, InvalidInputException{
-		Autokey cipher = new Autokey(false, true, true);
+	public void testConstructor_preserves(){
+		cipher = new Autokey(true, false, false);
+		assertTrue(cipher.preserveCapitals);
+		assertFalse(cipher.preserveWhitespace);
+		assertFalse(cipher.preserveSymbols);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals("", cipher.keyword);
+		assertEquals(0, cipher.offset.size());
 
-		//Test lowercase decoding
-		String inputString = "WIQOOXHFSWFCUHX";
-		String keyword = "keyword";
-		String correctOutput = "MESSAGETOENCODE";
-		String output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "WIQOOXHFSWFCUHX";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
+		cipher = new Autokey(false, true, false);
+		assertFalse(cipher.preserveCapitals);
+		assertTrue(cipher.preserveWhitespace);
+		assertFalse(cipher.preserveSymbols);
 
-		//Test whitespace decoding
-		inputString = "WIQOOXH FS WFCUHX";
-		keyword = "keyword";
-		correctOutput = "MESSAGE TO ENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "WIQOOXH*FS+WFCUHX";
-		keyword = "keyword";
-		correctOutput = "MESSAGE*TO+ENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol decoding
-		inputString = "WIQOOXH FS^WFCUHX";
-		keyword = "keyword";
-		correctOutput = "MESSAGE TO^ENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
+		cipher = new Autokey(false, false, true);
+		assertFalse(cipher.preserveCapitals);
+		assertFalse(cipher.preserveWhitespace);
+		assertTrue(cipher.preserveSymbols);
 	}
 
 	@Test
-	public void testNoWhitespaceDecode() throws InvalidKeywordException, InvalidInputException{
-		Autokey cipher = new Autokey(true, false, true);
+	public void testEncodeSet(){
+		cipher.preserveCapitals = true;
+		cipher.preserveWhitespace = true;
+		cipher.preserveSymbols = true;
 
-		//Test lowercase decoding
-		String inputString = "wiqooxhfswfcuhx";
-		String keyword = "keyword";
-		String correctOutput = "messagetoencode";
-		String output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "WIQOOXHFSWFCUHX";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
+		cipher.encodeSet(keyword, decodedString);
 
-		//Test whitespace decoding
-		inputString = "wiqooxh fs wfcuhx";
-		keyword = "keyword";
-		correctOutput = "messagetoencode";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "wiqooxh*fs+wfcuhx";
-		keyword = "keyword";
-		correctOutput = "message*to+encode";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol decoding
-		inputString = "Wiqooxh fs^wfcuhx";
-		keyword = "keyword";
-		correctOutput = "Messageto^encode";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
+		assertEquals(decodedString, cipher.inputString);
+		assertEquals((keyword + decodedString.replaceAll("\\s", "").replaceAll("[^a-zA-Z\\s]", "").substring(0, 8)).toUpperCase(), cipher.keyword);
+		assertEquals(offset, cipher.offset);
+		verify(logger, times(1)).debug("Setting fields for encoding");
+		verify(logger, times(1)).debug("Setting keyword");
+		verify(logger, times(1)).debug("Adding input to keyword");
+		verify(logger, times(1)).debug("Removing last letters in the keyword");
+		verify(logger, times(4)).debug(anyString());
 	}
 
 	@Test
-	public void testNoSymbolDecode() throws InvalidKeywordException, InvalidInputException{
-		Autokey cipher = new Autokey(true, true, false);
+	public void testDecodeSet(){
+		cipher.preserveCapitals = true;
+		cipher.preserveWhitespace = true;
+		cipher.preserveSymbols = true;
 
-		//Test lowercase decoding
-		String inputString = "wiqooxhfswfcuhx";
-		String keyword = "keyword";
-		String correctOutput = "messagetoencode";
-		String output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "WIQOOXHFSWFCUHX";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
+		cipher.decodeSet(keyword, decodedString);
 
-		//Test whitespace decoding
-		inputString = "wiqooxh fs wfcuhx";
-		keyword = "keyword";
-		correctOutput = "message to encode";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "wiqooxh*fs+wfcuhx";
-		keyword = "keyword";
-		correctOutput = "messagetoencode";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol decoding
-		inputString = "Wiqooxh fs^wfcuhx";
-		keyword = "keyword";
-		correctOutput = "Message toencode";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
+		assertEquals(keyword.toUpperCase(), cipher.keyword);
+		assertEquals(decodedString, cipher.inputString);
+		verify(logger, times(1)).debug("Setting fields for decoding");
+		verify(logger, times(1)).debug("Setting keyword");
+		verify(logger, times(1)).debug("Setting input string");
+		verify(logger, times(3)).debug(anyString());
 	}
 
 	@Test
-	public void testNoCapitalWhitespaceSymbolDecode() throws InvalidKeywordException, InvalidInputException{
-		Autokey cipher = new Autokey(false, false, false);
+	public void testDecode(){
+		cipher.preserveCapitals = true;
+		cipher.preserveWhitespace = true;
+		cipher.preserveSymbols = true;
+		Autokey.logger = mock(Logger.class);
+		cipher.decodeSet(keyword, encodedString);
+		Autokey.logger = logger;
 
-		//Test lowercase decoding
-		String inputString = "WIQOOXHFSWFCUHX";
-		String keyword = "keyword";
-		String correctOutput = "MESSAGETOENCODE";
-		String output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "WIQOOXHFSWFCUHX";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
+		cipher.decode();
 
-		//Test whitespace decoding
-		inputString = "WIQOOXH FS WFCUHX";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
+		assertEquals(decodedString, cipher.outputString);
+		verify(logger, times(1)).debug("Decoding");
+		verify(logger, times(2)).debug("Appending partial output to keyword");
+		verify(logger, times(17)).debug(eq("Working character {}"), anyChar());
+		verify(logger, times(2)).debug("Appending uppercase");
+		verify(logger, times(1)).debug("Wrapping around to Z");
+		verify(logger, times(13)).debug("Appending lowercase");
+		verify(logger, times(3)).debug("Wrapping around to z");
+		verify(logger, times(17)).debug(eq("Decoded letter {}"), anyChar());
+		verify(logger, times(1)).debug("Saving output string '{}'", decodedString);
+	}
 
-		//Test symbol decoding
-		inputString = "WIQOOXH*FS+WFCUHX";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
+	@Test
+	public void testGetters(){
+		cipher.inputString = decodedString;
+		cipher.outputString = encodedString;
+		cipher.keyword = keyword;
+		cipher.offset.add(1);
 
-		//Test mixed case, whitespace, symbol decoding
-		inputString = "WIQOOXH FS^WFCUHX";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
+		assertEquals(decodedString, cipher.getInputString());
+		assertEquals(encodedString, cipher.getOutputString());
+		assertEquals(keyword, cipher.getKeyword());
+		assertEquals(new ArrayList<>(List.of(1)), cipher.getOffsets());
+	}
+
+	@Test
+	public void testReset(){
+		cipher.inputString = decodedString;
+		cipher.outputString = encodedString;
+		cipher.keyword = keyword;
+		cipher.offset.add(1);
+
+		cipher.reset();
+
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals("", cipher.keyword);
+		assertEquals(0, cipher.offset.size());
+	}
+
+	@Test
+	public void testPracticalEncoding(){
+		//Test as original
+		cipher = new Autokey(true, true, true);
+		String output = cipher.encode(keyword, decodedString);
+		assertEquals(encodedString, output);
+
+		//Test fully cleaned
+		cipher = new Autokey(false, false, false);
+		output = cipher.encode(keyword, decodedString);
+		assertEquals(encodedStringClean, output);
+	}
+
+	@Test
+	public void testPracticalDecoding(){
+		//Test as original
+		cipher = new Autokey(true, true, true);
+		String output = cipher.decode(keyword, encodedString);
+		assertEquals(decodedString, output);
+
+		//Test fully cleaned
+		cipher = new Autokey(false, false, false);
+		output = cipher.decode(keyword, encodedString);
+		assertEquals(decodedStringClean, output);
 	}
 
 
 	@Test
-	public void testKeyword() throws InvalidKeywordException{
+	public void testSetKeyword() throws InvalidKeywordException{
 		Autokey cipher = new Autokey();
 
 		//Test keyword with whitespace

src/test/java/com/mattrixwv/cipherstream/monosubstitution/TestBaconian.java

@@ -1,103 +1,319 @@
 //CipherStreamJava/src/test/java/com/mattrixwv/CipherStreamJava/TestBaconian.java
 //Mattrixwv
 // Created: 01-12-22
-//Modified: 07-09-22
+//Modified: 04-16-23
 package com.mattrixwv.cipherstream.monosubstitution;
 
 
 import static org.junit.jupiter.api.Assertions.assertEquals;
+import static org.junit.jupiter.api.Assertions.assertFalse;
+import static org.junit.jupiter.api.Assertions.assertThrows;
+import static org.junit.jupiter.api.Assertions.assertTrue;
+import static org.mockito.ArgumentMatchers.anyChar;
+import static org.mockito.ArgumentMatchers.anyInt;
+import static org.mockito.ArgumentMatchers.anyString;
+import static org.mockito.ArgumentMatchers.eq;
+import static org.mockito.Mockito.mock;
+import static org.mockito.Mockito.never;
+import static org.mockito.Mockito.times;
+import static org.mockito.Mockito.verify;
 
+import org.junit.jupiter.api.BeforeEach;
 import org.junit.jupiter.api.Test;
+import org.slf4j.Logger;
 
 import com.mattrixwv.cipherstream.exceptions.InvalidCharacterException;
 import com.mattrixwv.cipherstream.exceptions.InvalidInputException;
 
 
 public class TestBaconian{
-	@Test
-	public void testEncode() throws InvalidInputException{
-		Baconian cipher = new Baconian(true);
+	private Baconian cipher;
+	private Logger logger;
+	//Variables
+	private String decodedString = "Message to-encode";
+	private String decodedStringCleanUpper = "Messagetoencode";
+	private String decodedStringCleanLower = "messagetoencode";
+	private String encodedString = "ABABB aabaa baaab baaab aaaaa aabba aabaa baaba abbab aabaa abbaa aaaba abbab aaabb aabaa";
 
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String correctOutput = "ababb aabaa baaab baaab aaaaa aabba aabaa baaba abbab aabaa abbaa aaaba abbab aaabb aabaa";
-		String output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		correctOutput = "ABABB AABAA BAAAB BAAAB AAAAA AABBA AABAA BAABA ABBAB AABAA ABBAA AAABA ABBAB AAABB AABAA";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
 
-		//Test mixed case, whitespace, and symbol encoding
-		inputString = "Message to-encode";
-		correctOutput = "ABABB aabaa baaab baaab aaaaa aabba aabaa baaba abbab aabaa abbaa aaaba abbab aaabb aabaa";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-	}
-	@Test
-	public void testEncodeNoCapital() throws InvalidInputException{
-		Baconian cipher = new Baconian(false);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String correctOutput = "ababb aabaa baaab baaab aaaaa aabba aabaa baaba abbab aabaa abbaa aaaba abbab aaabb aabaa";
-		String output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		correctOutput = "ababb aabaa baaab baaab aaaaa aabba aabaa baaba abbab aabaa abbaa aaaba abbab aaabb aabaa";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol encoding
-		inputString = "Message to-encode";
-		correctOutput = "ababb aabaa baaab baaab aaaaa aabba aabaa baaba abbab aabaa abbaa aaaba abbab aaabb aabaa";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
+	@BeforeEach
+	public void setup(){
+		cipher = new Baconian();
+		logger = mock(Logger.class);
+		Baconian.logger = logger;
 	}
 
 
 	@Test
-	public void testDecode() throws InvalidCharacterException, InvalidInputException{
-		Baconian cipher = new Baconian(true);
+	public void testConstructor_default(){
+		cipher = new Baconian();
 
-		//Test lowercase decoding
-		String inputString = "ababb aabaa baaab baaab aaaaa aabba aabaa baaba abbab aabaa abbaa aaaba abbab aaabb aabaa";
-		String correctOutput = "messagetoencode";
-		String output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "ABABB AABAA BAAAB BAAAB AAAAA AABBA AABAA BAABA ABBAB AABAA ABBAA AAABA ABBAB AAABB AABAA";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol decoding
-		inputString = "ABABB aabaa baaab baaab aaaaa aabba aabaa baaba abbab aabaa abbaa aaaba abbab aaabb aabaa";
-		correctOutput = "Messagetoencode";
-		output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
+		assertFalse(cipher.preserveCapitals);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
 	}
+
 	@Test
-	public void testDecodeNoCapital() throws InvalidCharacterException, InvalidInputException{
-		Baconian cipher = new Baconian(false);
+	public void testConstructor_preserves(){
+		cipher = new Baconian(true);
 
-		//Test lowercase decoding
-		String inputString = "ababb aabaa baaab baaab aaaaa aabba aabaa baaba abbab aabaa abbaa aaaba abbab aaabb aabaa";
-		String correctOutput = "messagetoencode";
-		String output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "ABABB AABAA BAAAB BAAAB AAAAA AABBA AABAA BAABA ABBAB AABAA ABBAA AAABA ABBAB AAABB AABAA";
-		correctOutput = "messagetoencode";
-		output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
+		assertTrue(cipher.preserveCapitals);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+	}
 
-		//Test mixed case, whitespace, and symbol decoding
-		inputString = "ABABB aabaa baaab baaab aaaaa aabba aabaa baaba abbab aabaa abbaa aaaba abbab aaabb aabaa";
-		correctOutput = "messagetoencode";
-		output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
+	@Test
+	public void testSetInputStringEncode(){
+		cipher.preserveCapitals = true;
+
+		cipher.setInputStringEncode(decodedString);
+
+		assertEquals(decodedStringCleanUpper, cipher.inputString);
+		verify(logger, times(1)).debug("Setting input string for encoding '{}'", decodedString);
+		verify(logger, never()).debug("Removing case");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", decodedStringCleanUpper);
+		verify(logger, never()).debug(anyString());
+		verify(logger, times(2)).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetInputStringEncode_noCapitals(){
+		cipher.preserveCapitals = false;
+
+		cipher.setInputStringEncode(decodedString);
+
+		assertEquals(decodedStringCleanLower, cipher.inputString);
+		verify(logger, times(1)).debug("Setting input string for encoding '{}'", decodedString);
+		verify(logger, times(1)).debug("Removing case");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", decodedStringCleanLower);
+		verify(logger, times(1)).debug(anyString());
+		verify(logger, times(2)).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetInputStringEncode_blank(){
+		cipher.preserveCapitals = true;
+
+		assertThrows(InvalidInputException.class, () -> {
+			cipher.setInputStringEncode("");
+		}, "Input must contain at least 1 letter");
+
+		assertEquals("", cipher.inputString);
+		verify(logger, times(1)).debug("Setting input string for encoding '{}'", "");
+		verify(logger, never()).debug("Removing case");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", "");
+		verify(logger, never()).debug(anyString());
+		verify(logger, times(2)).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetInputStringEncode_null(){
+		cipher.preserveCapitals = true;
+
+		assertThrows(InvalidInputException.class, () -> {
+			cipher.setInputStringEncode(null);
+		}, "Input cannot be null");
+
+		assertEquals("", cipher.inputString);
+		verify(logger, never()).debug(anyString());
+		verify(logger, never()).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetInputStringDecode(){
+		cipher.preserveCapitals = true;
+
+		cipher.setInputStringDecode(encodedString);
+
+		assertEquals(encodedString, cipher.inputString);
+		verify(logger, times(1)).debug("Setting input string for decoding '{}'", encodedString);
+		verify(logger, never()).debug("Removing case");
+		verify(logger, times(1)).debug("Ensuring all 'letters' contain 5 characters");
+		verify(logger, times(15)).debug(eq("Current 'letter' {}"), anyString());
+		verify(logger, times(15)).debug("Replacing all non-abAB characters");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", encodedString);
+		verify(logger, times(16)).debug(anyString());
+		verify(logger, times(17)).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetInputStringDecode_noCapitals(){
+		cipher.preserveCapitals = false;
+
+		cipher.setInputStringDecode(encodedString);
+
+		assertEquals(encodedString.toLowerCase(), cipher.inputString);
+		verify(logger, times(1)).debug("Setting input string for decoding '{}'", encodedString);
+		verify(logger, times(1)).debug("Removing case");
+		verify(logger, times(1)).debug("Ensuring all 'letters' contain 5 characters");
+		verify(logger, times(15)).debug(eq("Current 'letter' {}"), anyString());
+		verify(logger, times(15)).debug("Replacing all non-abAB characters");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", encodedString.toLowerCase());
+		verify(logger, times(17)).debug(anyString());
+		verify(logger, times(17)).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetInputStringDecode_invalidLength(){
+		cipher.preserveCapitals = true;
+
+		assertThrows(InvalidCharacterException.class, () -> {
+			cipher.setInputStringDecode("a");
+		}, "All Baconian letters contain exactly 5 characters: a");
+
+		assertEquals("", cipher.inputString);
+		verify(logger, times(1)).debug("Setting input string for decoding '{}'", "a");
+		verify(logger, never()).debug("Removing case");
+		verify(logger, times(1)).debug("Ensuring all 'letters' contain 5 characters");
+		verify(logger, times(1)).debug(eq("Current 'letter' {}"), anyString());
+		verify(logger, never()).debug("Replacing all non-abAB characters");
+		verify(logger, never()).debug(eq("Cleaned input string '{}'"), anyString());
+		verify(logger, times(1)).debug(anyString());
+		verify(logger, times(2)).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetInputStringDecode_invalidChars(){
+		cipher.preserveCapitals = true;
+
+		assertThrows(InvalidCharacterException.class, () -> {
+			cipher.setInputStringDecode("ccccc");
+		}, "Baconian letters contain only a's and b's: ccccc");
+
+		assertEquals("", cipher.inputString);
+		verify(logger, times(1)).debug("Setting input string for decoding '{}'", "ccccc");
+		verify(logger, never()).debug("Removing case");
+		verify(logger, times(1)).debug("Ensuring all 'letters' contain 5 characters");
+		verify(logger, times(1)).debug("Current 'letter' {}", "ccccc");
+		verify(logger, times(1)).debug("Replacing all non-abAB characters");
+		verify(logger, never()).debug(eq("Cleaned input string '{}'"), anyString());
+		verify(logger, times(2)).debug(anyString());
+		verify(logger, times(2)).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetInputStringDecode_blank(){
+		cipher.preserveCapitals = true;
+
+		assertThrows(InvalidInputException.class, () -> {
+			cipher.setInputStringDecode("");
+		}, "Input cannot be empty");
+
+		assertEquals("", cipher.inputString);
+		verify(logger, never()).debug("Setting input string for decoding '{}'", "");
+		verify(logger, never()).debug("Removing case");
+		verify(logger, never()).debug("Ensuring all 'letters' contain 5 characters");
+		verify(logger, never()).debug(eq("Current 'letter' {}"), anyString());
+		verify(logger, never()).debug("Replacing all non-abAB characters");
+		verify(logger, never()).debug("Cleaned input string '{}'", "");
+		verify(logger, never()).debug(anyString());
+		verify(logger, never()).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetInputStringDecode_null(){
+		cipher.preserveCapitals = true;
+
+		assertThrows(InvalidInputException.class, () -> {
+			cipher.setInputStringDecode(null);
+		}, "Input cannot be null");
+
+		assertEquals("", cipher.inputString);
+		verify(logger, never()).debug(anyString());
+		verify(logger, never()).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testEncode(){
+		cipher.preserveCapitals = true;
+		cipher.inputString = decodedStringCleanUpper;
+
+		cipher.encode();
+
+		assertEquals(encodedString, cipher.outputString);
+		verify(logger, times(1)).debug("Encoding");
+		verify(logger, times(15)).debug(eq("Working character {}"), anyChar());
+		verify(logger, times(1)).debug("Encoding uppercase");
+		verify(logger, times(14)).debug("Encoding lowercase");
+		verify(logger, times(15)).debug(eq("Output letter {}"), anyString());
+		verify(logger, times(1)).debug("Saving output string '{}'", encodedString);
+		verify(logger, times(16)).debug(anyString());
+		verify(logger, times(16)).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testDecode(){
+		cipher.preserveCapitals = true;
+		cipher.inputString = encodedString;
+
+		cipher.decode();
+
+		assertEquals(decodedStringCleanUpper, cipher.outputString);
+		verify(logger, times(1)).debug("Decoding");
+		verify(logger, times(15)).debug(eq("Working letter {}"), anyString());
+		verify(logger, times(15)).debug(eq("Location of letter {}"), anyInt());
+		verify(logger, times(1)).debug("Decoding uppercase");
+		verify(logger, times(14)).debug("Decoding lowercase");
+		verify(logger, times(15)).debug(eq("Decoded character {}"), anyChar());
+		verify(logger, times(1)).debug("Saving output string '{}'", decodedStringCleanUpper);
+		verify(logger, times(16)).debug(anyString());
+		verify(logger, times(16)).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testGetters(){
+		cipher.inputString = decodedString;
+		cipher.outputString = encodedString;
+
+		assertEquals(decodedString, cipher.getInputString());
+		assertEquals(encodedString, cipher.getOutputString());
+	}
+
+	@Test
+	public void testReset(){
+		cipher.inputString = decodedString;
+		cipher.outputString = encodedString;
+
+		cipher.reset();
+
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		verify(logger, times(1)).debug("Resetting fields");
+	}
+
+	@Test
+	public void testPracticalEncoding(){
+		//Test as original
+		cipher.preserveCapitals = true;
+		String output = cipher.encode(decodedString);
+		assertEquals(encodedString, output);
+
+		//Test fully cleaned
+		cipher.preserveCapitals = false;
+		output = cipher.encode(decodedString);
+		assertEquals(encodedString.toLowerCase(), output);
+	}
+
+	@Test
+	public void testPracticalDecoding(){
+		//Test as original
+		cipher.preserveCapitals = true;
+		String output = cipher.decode(encodedString);
+		assertEquals(decodedStringCleanUpper, output);
+
+		//Test fully cleaned
+		cipher.preserveCapitals = false;
+		output = cipher.decode(encodedString);
+		assertEquals(decodedStringCleanLower, output);
+
+		//Test uppercase input
+		cipher.preserveCapitals = false;
+		output = cipher.decode(encodedString.toUpperCase());
+		assertEquals(decodedStringCleanLower, output);
+
+		//Test lowercase input
+		cipher.preserveCapitals = false;
+		output = cipher.decode(encodedString.toLowerCase());
+		assertEquals(decodedStringCleanLower, output);
 	}
 }

src/test/java/com/mattrixwv/cipherstream/monosubstitution/TestBaseX.java

@@ -1,13 +1,24 @@
 //CipherStreamJava/src/test/java/com/mattrixwv/CipherStreamJava/monoSubstitution/TestBaseX.java
 //Mattrixwv
 // Created: 01-08-22
-//Modified: 07-09-22
+//Modified: 04-16-23
 package com.mattrixwv.cipherstream.monosubstitution;
 
 
 import static org.junit.jupiter.api.Assertions.assertEquals;
+import static org.junit.jupiter.api.Assertions.assertThrows;
+import static org.mockito.ArgumentMatchers.anyChar;
+import static org.mockito.ArgumentMatchers.anyInt;
+import static org.mockito.ArgumentMatchers.anyString;
+import static org.mockito.ArgumentMatchers.eq;
+import static org.mockito.Mockito.mock;
+import static org.mockito.Mockito.never;
+import static org.mockito.Mockito.times;
+import static org.mockito.Mockito.verify;
 
+import org.junit.jupiter.api.BeforeEach;
 import org.junit.jupiter.api.Test;
+import org.slf4j.Logger;
 
 import com.mattrixwv.cipherstream.exceptions.InvalidBaseException;
 import com.mattrixwv.cipherstream.exceptions.InvalidCharacterException;
@@ -15,270 +26,292 @@ import com.mattrixwv.cipherstream.exceptions.InvalidInputException;
 
 
 public class TestBaseX{
-	@Test
-	public void testBinaryEncode() throws InvalidBaseException, InvalidInputException{
-		BaseX cipher = new BaseX();
+	private BaseX cipher;
+	private Logger logger;
+	//Variables
+	private String decodedString = "A+B@C d\te\nf";
+	private String encodedString_2 = "1000001 101011 1000010 1000000 1000011 100000 1100100 1001 1100101 1010 1100110";
+	private String encodedString_8 = "101 53 102 100 103 40 144 11 145 12 146";
+	private String encodedString_10 = "65 43 66 64 67 32 100 9 101 10 102";
+	private String encodedString_16 = "41 2B 42 40 43 20 64 9 65 A 66";
 
-		//Test lowercase encoding
-		String inputString = "a";
-		String correctOutput = "1100001";
-		String output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "A";
-		correctOutput = "1000001";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
 
-		//Test whitespace encoding
-		inputString = "A B\tC\n";
-		correctOutput = "1000001 100000 1000010 1001 1000011 1010";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "A@B-C+";
-		correctOutput = "1000001 1000000 1000010 101101 1000011 101011";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol encoding
-		inputString = "A+B@C d\te\nf";
-		correctOutput = "1000001 101011 1000010 1000000 1000011 100000 1100100 1001 1100101 1010 1100110";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-	}
-	@Test
-	public void testOctalEncode() throws InvalidBaseException, InvalidInputException{
-		BaseX cipher = new BaseX(8);
-
-		//Test lowercase encoding
-		String inputString = "a";
-		String correctOutput = "141";
-		String output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "A";
-		correctOutput = "101";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "A B\tC\n";
-		correctOutput = "101 40 102 11 103 12";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "A@B-C+";
-		correctOutput = "101 100 102 55 103 53";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol encoding
-		inputString = "A+B@C d\te\nf";
-		correctOutput = "101 53 102 100 103 40 144 11 145 12 146";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-	}
-	@Test
-	public void testDecimalEncode() throws InvalidBaseException, InvalidInputException{
-		BaseX cipher = new BaseX(10);
-
-		//Test lowercase encoding
-		String inputString = "a";
-		String correctOutput = "97";
-		String output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "A";
-		correctOutput = "65";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "A B\tC\n";
-		correctOutput = "65 32 66 9 67 10";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "A@B-C+";
-		correctOutput = "65 64 66 45 67 43";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol encoding
-		inputString = "A+B@C d\te\nf";
-		correctOutput = "65 43 66 64 67 32 100 9 101 10 102";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-	}
-	@Test
-	public void testHexEncode() throws InvalidBaseException, InvalidInputException{
-		BaseX cipher = new BaseX(16);
-
-		//Test lowercase encoding
-		String correctOutput = "61";
-		String inputString = "a";
-		String output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "A";
-		correctOutput = "41";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "A B\tC\n";
-		correctOutput = "41 20 42 9 43 A";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "A@B-C+";
-		correctOutput = "41 40 42 2D 43 2B";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol encoding
-		inputString = "A+B@C d\te\nf";
-		correctOutput = "41 2B 42 40 43 20 64 9 65 A 66";
-		output = cipher.encode(inputString);
-		assertEquals(correctOutput, output);
+	@BeforeEach
+	public void setup(){
+		cipher = new BaseX();
+		logger = mock(Logger.class);
+		BaseX.logger = logger;
 	}
 
 
 	@Test
-	public void testBinaryDecode() throws InvalidCharacterException, InvalidBaseException, InvalidInputException{
-		BaseX cipher = new BaseX();
+	public void testConstructor_default(){
+		cipher = new BaseX();
 
-		//Test lowercase decoding
-		String inputString = "1100001";
-		String correctOutput = "a";
-		String output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "1000001";
-		correctOutput = "A";
-		output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace decoding
-		inputString = "1000001 100000 1000010 1001 1000011 1010";
-		correctOutput = "A B\tC\n";
-		output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "1000001 1000000 1000010 101101 1000011 101011";
-		correctOutput = "A@B-C+";
-		output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol decoding
-		inputString = "1000001 101011 1000010 1000000 1000011 100000 1100100 1001 1100101 1010 1100110";
-		correctOutput = "A+B@C d\te\nf";
-		output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals(2, cipher.base);
 	}
+
 	@Test
-	public void testOctalDecode() throws InvalidCharacterException, InvalidBaseException, InvalidInputException{
-		BaseX cipher = new BaseX(8);
+	public void testConstructor_base(){
+		cipher = new BaseX(8);
 
-		//Test lowercase decoding
-		String inputString = "141";
-		String correctOutput = "a";
-		String output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "101";
-		correctOutput = "A";
-		output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace decoding
-		inputString = "101 40 102 11 103 12";
-		correctOutput = "A B\tC\n";
-		output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "101 100 102 55 103 53";
-		correctOutput = "A@B-C+";
-		output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol decoding
-		inputString = "101 53 102 100 103 40 144 11 145 12 146";
-		correctOutput = "A+B@C d\te\nf";
-		output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals(8, cipher.base);
 	}
+
 	@Test
-	public void testDecimalDecode() throws InvalidCharacterException, InvalidBaseException, InvalidInputException{
-		BaseX cipher = new BaseX(10);
+	public void testSetInputStringEncode(){
+		cipher.setInputStringEncode(decodedString);
 
-		//Test lowercase decoding
-		String inputString = "97";
-		String correctOutput = "a";
-		String output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "65";
-		correctOutput = "A";
-		output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace decoding
-		inputString = "65 32 66 9 67 10";
-		correctOutput = "A B\tC\n";
-		output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "65 64 66 45 67 43";
-		correctOutput = "A@B-C+";
-		output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, and symbol decoding
-		inputString = "65 43 66 64 67 32 100 9 101 10 102";
-		correctOutput = "A+B@C d\te\nf";
-		output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
+		assertEquals(decodedString, cipher.inputString);
+		verify(logger, times(1)).debug("Setting input string for encoding '{}'", decodedString);
+		verify(logger, times(1)).debug(anyString(), anyString());
+		verify(logger, never()).debug(anyString());
 	}
+
 	@Test
-	public void testHexDecode() throws InvalidCharacterException, InvalidBaseException, InvalidInputException{
-		BaseX cipher = new BaseX(16);
+	public void testSetInputStringEncode_blank(){
+		assertThrows(InvalidInputException.class, () -> {
+			cipher.setInputStringEncode("");
+		}, "Input must contain at least 1 letter");
 
-		//Test lowercase decoding
-		String inputString = "61";
-		String correctOutput = "a";
-		String output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "41";
-		correctOutput = "A";
-		output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
+		assertEquals("", cipher.inputString);
+		verify(logger, times(1)).debug("Setting input string for encoding '{}'", "");
+		verify(logger, times(1)).debug(anyString(), anyString());
+		verify(logger, never()).debug(anyString());
+	}
 
-		//Test whitespace decoding
-		inputString = "41 20 42 9 43 A";
-		correctOutput = "A B\tC\n";
-		output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
+	@Test
+	public void testSetInputStringEncode_null(){
+		assertThrows(InvalidInputException.class, () -> {
+			cipher.setInputStringEncode(null);
+		}, "Input cannot be null");
 
-		//Test symbol decoding
-		inputString = "41 40 42 2D 43 2B";
-		correctOutput = "A@B-C+";
-		output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
+		assertEquals("", cipher.inputString);
+		verify(logger, never()).debug("Setting input string for encoding '{}'", decodedString);
+		verify(logger, never()).debug(anyString(), anyString());
+		verify(logger, never()).debug(anyString());
+	}
 
-		//Test mixed case, whitespace, and symbol decoding
-		inputString = "41 2B 42 40 43 20 64 9 65 A 66";
-		correctOutput = "A+B@C d\te\nf";
-		output = cipher.decode(inputString);
-		assertEquals(correctOutput, output);
+	@Test
+	public void testSetInputStringDecode(){
+		cipher.base = 16;
+
+		cipher.setInputStringDecode(encodedString_16);
+
+		assertEquals(encodedString_16, cipher.inputString);
+		verify(logger, times(1)).debug("Setting input string for decoding '{}'", encodedString_16);
+		verify(logger, times(1)).debug("Creating string of valid 'numbers'");
+		verify(logger, times(16)).debug(eq("Current number {}, converted {}"), anyInt(), anyString());
+		verify(logger, times(1)).debug("Checking for invalid characters");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", encodedString_16);
+	}
+
+	@Test
+	public void testSetInputStringDecode_invalid(){
+		cipher.base = 16;
+
+		assertThrows(InvalidCharacterException.class, () -> {
+			cipher.setInputStringDecode("G");
+		}, "inputString cannot contain anything except numbers 0-15, and whitespace");
+
+		assertEquals("", cipher.inputString);
+		verify(logger, times(1)).debug("Setting input string for decoding '{}'", "G");
+		verify(logger, times(1)).debug("Creating string of valid 'numbers'");
+		verify(logger, times(16)).debug(eq("Current number {}, converted {}"), anyInt(), anyString());
+		verify(logger, times(1)).debug("Checking for invalid characters");
+		verify(logger, never()).debug(eq("Cleaned input string '{}'"), anyString());
+	}
+
+	@Test
+	public void testSetInputStringDecode_blank(){
+		cipher.base = 16;
+
+		assertThrows(InvalidInputException.class, () -> {
+			cipher.setInputStringDecode("");
+		}, "Input must contain at least 1 letter");
+
+		assertEquals("", cipher.inputString);
+		verify(logger, times(1)).debug("Setting input string for decoding '{}'", "");
+		verify(logger, times(1)).debug("Creating string of valid 'numbers'");
+		verify(logger, times(16)).debug(eq("Current number {}, converted {}"), anyInt(), anyString());
+		verify(logger, times(1)).debug("Checking for invalid characters");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", "");
+	}
+
+	@Test
+	public void testSetInputStringDecode_null(){
+		cipher.base = 16;
+
+		assertThrows(InvalidInputException.class, () -> {
+			cipher.setInputStringDecode(null);
+		}, "Input cannot be null");
+
+		assertEquals("", cipher.inputString);
+		verify(logger, never()).debug(eq("Setting input string for decoding '{}'"), anyString());
+		verify(logger, never()).debug("Creating string of valid 'numbers'");
+		verify(logger, never()).debug(eq("Current number {}, converted {}"), anyInt(), anyString());
+		verify(logger, never()).debug("Checking for invalid characters");
+		verify(logger, never()).debug(eq("Cleaned input string '{}'"), anyString());
+	}
+
+	@Test
+	public void testSetBase(){
+		cipher.setBase(16);
+
+		assertEquals(16, cipher.base);
+		verify(logger, times(1)).debug("Setting base {}", 16);
+		verify(logger, never()).debug(anyString());
+		verify(logger, never()).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetBase_min(){
+		assertThrows(InvalidBaseException.class, () -> {
+			cipher.setBase(Character.MIN_RADIX - 1);
+		}, "Base cannot be less than " + Character.MIN_RADIX);
+
+		assertEquals(2, cipher.base);
+		verify(logger, never()).debug(eq("Setting base {}"), anyInt());
+		verify(logger, never()).debug(anyString());
+		verify(logger, never()).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetBase_max(){
+		assertThrows(InvalidBaseException.class, () -> {
+			cipher.setBase(Character.MAX_RADIX + 1);
+		}, "Base cannot be larger than " + Character.MAX_RADIX);
+
+		assertEquals(2, cipher.base);
+		verify(logger, never()).debug(eq("Setting base {}"), anyInt());
+		verify(logger, never()).debug(anyString());
+		verify(logger, never()).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testEncode(){
+		cipher.base = 16;
+		cipher.inputString = decodedString;
+
+		cipher.encode();
+
+		assertEquals(encodedString_16, cipher.outputString);
+		verify(logger, times(1)).debug("Encoding");
+		verify(logger, times(11)).debug(eq("Working number {}"), anyChar());
+		verify(logger, times(11)).debug(eq("Converted number {}"), anyString());
+		verify(logger, times(1)).debug("Saving output string '{}'", encodedString_16);
+	}
+
+	@Test
+	public void testDecode(){
+		cipher.base = 16;
+		cipher.inputString = encodedString_16;
+
+		cipher.decode();
+
+		assertEquals(decodedString, cipher.outputString);
+		verify(logger, times(1)).debug("Decoding");
+		verify(logger, times(11)).debug(eq("Current number {}"), anyString());
+		verify(logger, times(11)).debug(eq("Decoded number {}"), anyInt());
+		verify(logger, times(1)).debug("Saving output string '{}'", decodedString);
+	}
+
+	@Test
+	public void testDecode_invalidCharacter(){
+		cipher.base = 16;
+		cipher.inputString = "FFF";
+
+		assertThrows(InvalidCharacterException.class, () -> {
+			cipher.decode();
+		}, "The base 16 string FFF is not a valid ASCII character");
+
+		verify(logger, times(1)).debug("Decoding");
+		verify(logger, times(1)).debug("Current number {}", "FFF");
+		verify(logger, times(1)).debug("Decoded number {}", 4095);
+		verify(logger, never()).debug(eq("Saving output string '{}'"), anyString());
+	}
+
+	@Test
+	public void testGetters(){
+		cipher.inputString = decodedString;
+		cipher.outputString = encodedString_2;
+		cipher.base = 8;
+
+		assertEquals(decodedString, cipher.getInputString());
+		assertEquals(encodedString_2, cipher.getOutputString());
+		assertEquals(8, cipher.getBase());
+	}
+
+	@Test
+	public void testReset(){
+		cipher.inputString = decodedString;
+		cipher.outputString = encodedString_2;
+
+		cipher.reset();
+
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		verify(logger, times(1)).debug("Resetting fields");
+		verify(logger, times(1)).debug(anyString());
+	}
+
+	@Test
+	public void testPracticalEncoding_2(){
+		String output = cipher.encode(2, decodedString);
+
+		assertEquals(encodedString_2, output);
+	}
+
+	@Test
+	public void testPracticalEncoding_8(){
+		String output = cipher.encode(8, decodedString);
+
+		assertEquals(encodedString_8, output);
+	}
+
+	@Test
+	public void testPracticalEncoding_10(){
+		String output = cipher.encode(10, decodedString);
+
+		assertEquals(encodedString_10, output);
+	}
+
+	@Test
+	public void testPracticalEncoding_16(){
+		String output = cipher.encode(16, decodedString);
+
+		assertEquals(encodedString_16, output);
+	}
+
+	@Test
+	public void testPracticalDecoding_2(){
+		String output = cipher.decode(2, encodedString_2);
+
+		assertEquals(decodedString, output);
+	}
+
+	@Test
+	public void testPracticalDecoding_8(){
+		String output = cipher.decode(8, encodedString_8);
+
+		assertEquals(decodedString, output);
+	}
+
+	@Test
+	public void testPracticalDecoding_10(){
+		String output = cipher.decode(10, encodedString_10);
+
+		assertEquals(decodedString, output);
+	}
+
+	@Test
+	public void testPracticalDecoding_16(){
+		String output = cipher.decode(16, encodedString_16);
+
+		assertEquals(decodedString, output);
 	}
 }

src/test/java/com/mattrixwv/cipherstream/monosubstitution/TestBeaufort.java

@@ -1,407 +1,399 @@
 //CipherStreamJava/src/test/java/com/mattrixwv/CipherStreamJava/monoSubstitution/TestBeaufort.java
 //Mattrixwv
 // Created: 02-23-22
-//Modified: 07-09-22
+//Modified: 04-16-23
 package com.mattrixwv.cipherstream.monosubstitution;
 
 
 import static org.junit.jupiter.api.Assertions.assertEquals;
+import static org.junit.jupiter.api.Assertions.assertFalse;
+import static org.junit.jupiter.api.Assertions.assertThrows;
+import static org.junit.jupiter.api.Assertions.assertTrue;
+import static org.mockito.ArgumentMatchers.anyString;
+import static org.mockito.ArgumentMatchers.eq;
+import static org.mockito.Mockito.mock;
+import static org.mockito.Mockito.never;
+import static org.mockito.Mockito.times;
+import static org.mockito.Mockito.verify;
 
+import org.junit.jupiter.api.BeforeEach;
 import org.junit.jupiter.api.Test;
+import org.slf4j.Logger;
 
 import com.mattrixwv.cipherstream.exceptions.InvalidInputException;
 import com.mattrixwv.cipherstream.exceptions.InvalidKeywordException;
 
 
 public class TestBeaufort{
-	@Test
-	public void testEncode() throws InvalidKeywordException, InvalidInputException{
-		Beaufort cipher = new Beaufort(true, true, true);
+	private Beaufort cipher;
+	private Logger logger;
+	//Variables
+	private String decodedString = "Message to^encode";
+	private String decodedStringClean = "MESSAGETOENCODE";
+	private String encodedString = "Yageolz rq^ujmdag";
+	private String encodedStringClean = "YAGEOLZRQUJMDAG";
+	private String keyword = "keyword";
+	private String keywordDirty = "Ke*y word";
 
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String keyword = "keyword";
-		String correctOutput = "yageolzrqujmdag";
-		String output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		keyword = "keyword";
-		correctOutput = "YAGEOLZRQUJMDAG";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
 
-		//Test whitespace encoding
-		inputString = "message to encode";
-		keyword = "keyword";
-		correctOutput = "yageolz rq ujmdag";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode";
-		keyword = "keyword";
-		correctOutput = "yageolz*rq+ujmdag";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol encoding
-		inputString = "Message to^encode";
-		keyword = "keyword";
-		correctOutput = "Yageolz rq^ujmdag";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-	}
-
-	@Test
-	public void testNoCapitalEncode() throws InvalidKeywordException, InvalidInputException{
-		Beaufort cipher = new Beaufort(false, true, true);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String keyword = "keyword";
-		String correctOutput = "YAGEOLZRQUJMDAG";
-		String output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		keyword = "keyword";
-		correctOutput = "YAGEOLZRQUJMDAG";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "message to encode";
-		keyword = "keyword";
-		correctOutput = "YAGEOLZ RQ UJMDAG";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode";
-		keyword = "keyword";
-		correctOutput = "YAGEOLZ*RQ+UJMDAG";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol encoding
-		inputString = "Message to^encode";
-		keyword = "keyword";
-		correctOutput = "YAGEOLZ RQ^UJMDAG";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-	}
-
-	@Test
-	public void testNoWhitespaceEncode() throws InvalidKeywordException, InvalidInputException{
-		Beaufort cipher = new Beaufort(true, false, true);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String keyword = "keyword";
-		String correctOutput = "yageolzrqujmdag";
-		String output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		keyword = "keyword";
-		correctOutput = "YAGEOLZRQUJMDAG";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "message to encode";
-		keyword = "keyword";
-		correctOutput = "yageolzrqujmdag";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode";
-		keyword = "keyword";
-		correctOutput = "yageolz*rq+ujmdag";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol encoding
-		inputString = "Message to^encode";
-		keyword = "keyword";
-		correctOutput = "Yageolzrq^ujmdag";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-	}
-
-	@Test
-	public void testNoSymbolEncode() throws InvalidKeywordException, InvalidInputException{
-		Beaufort cipher = new Beaufort(true, true, false);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String keyword = "keyword";
-		String correctOutput = "yageolzrqujmdag";
-		String output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		keyword = "keyword";
-		correctOutput = "YAGEOLZRQUJMDAG";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "message to encode";
-		keyword = "keyword";
-		correctOutput = "yageolz rq ujmdag";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode";
-		keyword = "keyword";
-		correctOutput = "yageolzrqujmdag";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol encoding
-		inputString = "Message to^encode";
-		keyword = "keyword";
-		correctOutput = "Yageolz rqujmdag";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-	}
-
-	@Test
-	public void testNoCapitalwhitespaceSymbolEncode() throws InvalidKeywordException, InvalidInputException{
-		Beaufort cipher = new Beaufort(false, false, false);
-
-		//Test lowercase encoding
-		String inputString = "messagetoencode";
-		String keyword = "keyword";
-		String correctOutput = "YAGEOLZRQUJMDAG";
-		String output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		inputString = "MESSAGETOENCODE";
-		keyword = "keyword";
-		correctOutput = "YAGEOLZRQUJMDAG";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace encoding
-		inputString = "message to encode";
-		keyword = "keyword";
-		correctOutput = "YAGEOLZRQUJMDAG";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol encoding
-		inputString = "message*to+encode";
-		keyword = "keyword";
-		correctOutput = "YAGEOLZRQUJMDAG";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol encoding
-		inputString = "Message to^encode";
-		keyword = "keyword";
-		correctOutput = "YAGEOLZRQUJMDAG";
-		output = cipher.encode(keyword, inputString);
-		assertEquals(correctOutput, output);
+	@BeforeEach
+	public void setup(){
+		cipher = new Beaufort();
+		logger = mock(Logger.class);
+		Beaufort.logger = logger;
 	}
 
 
 	@Test
-	public void testDecode() throws InvalidKeywordException, InvalidInputException{
-		Beaufort cipher = new Beaufort(true, true, true);
+	public void testConstructor_default(){
+		cipher = new Beaufort();
 
-		//Test lowercase decoding
-		String inputString = "yageolzrqujmdag";
-		String keyword = "keyword";
-		String correctOutput = "messagetoencode";
-		String output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "YAGEOLZRQUJMDAG";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace decoding
-		inputString = "yageolz rq ujmdag";
-		keyword = "keyword";
-		correctOutput = "message to encode";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "yageolz*rq+ujmdag";
-		keyword = "keyword";
-		correctOutput = "message*to+encode";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol decoding
-		inputString = "Yageolz rq^ujmdag";
-		keyword = "keyword";
-		correctOutput = "Message to^encode";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals("", cipher.keyword);
+		assertFalse(cipher.preserveCapitals);
+		assertFalse(cipher.preserveWhitespace);
+		assertFalse(cipher.preserveSymbols);
+		assertFalse(cipher.atbash.preserveCapitals);
+		assertFalse(cipher.atbash.preserveWhitespace);
+		assertFalse(cipher.atbash.preserveSymbols);
+		assertFalse(cipher.caesar.preserveCapitals);
+		assertFalse(cipher.caesar.preserveWhitespace);
+		assertFalse(cipher.caesar.preserveSymbols);
+		assertFalse(cipher.vigenere.preserveCapitals);
+		assertFalse(cipher.vigenere.preserveWhitespace);
+		assertFalse(cipher.vigenere.preserveSymbols);
 	}
 
 	@Test
-	public void testNoCapitalDecode() throws InvalidKeywordException, InvalidInputException{
-		Beaufort cipher = new Beaufort(false, true, true);
+	public void testConstructor_preservesCapitals(){
+		cipher = new Beaufort(true, false, false);
 
-		//Test lowercase decoding
-		String inputString = "yageolzrqujmdag";
-		String keyword = "keyword";
-		String correctOutput = "MESSAGETOENCODE";
-		String output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "YAGEOLZRQUJMDAG";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace decoding
-		inputString = "yageolz rq ujmdag";
-		keyword = "keyword";
-		correctOutput = "MESSAGE TO ENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "yageolz*rq+ujmdag";
-		keyword = "keyword";
-		correctOutput = "MESSAGE*TO+ENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol decoding
-		inputString = "Yageolz rq^ujmdag";
-		keyword = "keyword";
-		correctOutput = "MESSAGE TO^ENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals("", cipher.keyword);
+		assertTrue(cipher.preserveCapitals);
+		assertFalse(cipher.preserveWhitespace);
+		assertFalse(cipher.preserveSymbols);
+		assertTrue(cipher.atbash.preserveCapitals);
+		assertFalse(cipher.atbash.preserveWhitespace);
+		assertFalse(cipher.atbash.preserveSymbols);
+		assertTrue(cipher.caesar.preserveCapitals);
+		assertFalse(cipher.caesar.preserveWhitespace);
+		assertFalse(cipher.caesar.preserveSymbols);
+		assertTrue(cipher.vigenere.preserveCapitals);
+		assertFalse(cipher.vigenere.preserveWhitespace);
+		assertFalse(cipher.vigenere.preserveSymbols);
 	}
 
 	@Test
-	public void testNoWhitespaceDecode() throws InvalidKeywordException, InvalidInputException{
-		Beaufort cipher = new Beaufort(true, false, true);
+	public void testConstructor_preservesWhitespace(){
+		cipher = new Beaufort(false, true, false);
 
-		//Test lowercase decoding
-		String inputString = "yageolzrqujmdag";
-		String keyword = "keyword";
-		String correctOutput = "messagetoencode";
-		String output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "YAGEOLZRQUJMDAG";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace decoding
-		inputString = "yageolz rq ujmdag";
-		keyword = "keyword";
-		correctOutput = "messagetoencode";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "yageolz*rq+ujmdag";
-		keyword = "keyword";
-		correctOutput = "message*to+encode";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol decoding
-		inputString = "Yageolz rq^ujmdag";
-		keyword = "keyword";
-		correctOutput = "Messageto^encode";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals("", cipher.keyword);
+		assertFalse(cipher.preserveCapitals);
+		assertTrue(cipher.preserveWhitespace);
+		assertFalse(cipher.preserveSymbols);
+		assertFalse(cipher.atbash.preserveCapitals);
+		assertTrue(cipher.atbash.preserveWhitespace);
+		assertFalse(cipher.atbash.preserveSymbols);
+		assertFalse(cipher.caesar.preserveCapitals);
+		assertTrue(cipher.caesar.preserveWhitespace);
+		assertFalse(cipher.caesar.preserveSymbols);
+		assertFalse(cipher.vigenere.preserveCapitals);
+		assertTrue(cipher.vigenere.preserveWhitespace);
+		assertFalse(cipher.vigenere.preserveSymbols);
 	}
 
 	@Test
-	public void testNoSymbolDecode() throws InvalidKeywordException, InvalidInputException{
-		Beaufort cipher = new Beaufort(true, true, false);
+	public void testConstructor_preservesSymbols(){
+		cipher = new Beaufort(false, false, true);
 
-		//Test lowercase decoding
-		String inputString = "yageolzrqujmdag";
-		String keyword = "keyword";
-		String correctOutput = "messagetoencode";
-		String output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "YAGEOLZRQUJMDAG";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test whitespace decoding
-		inputString = "yageolz rq ujmdag";
-		keyword = "keyword";
-		correctOutput = "message to encode";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test symbol decoding
-		inputString = "yageolz*rq+ujmdag";
-		keyword = "keyword";
-		correctOutput = "messagetoencode";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-
-		//Test mixed case, whitespace, symbol decoding
-		inputString = "Yageolz rq^ujmdag";
-		keyword = "keyword";
-		correctOutput = "Message toencode";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals("", cipher.keyword);
+		assertFalse(cipher.preserveCapitals);
+		assertFalse(cipher.preserveWhitespace);
+		assertTrue(cipher.preserveSymbols);
+		assertFalse(cipher.atbash.preserveCapitals);
+		assertFalse(cipher.atbash.preserveWhitespace);
+		assertTrue(cipher.atbash.preserveSymbols);
+		assertFalse(cipher.caesar.preserveCapitals);
+		assertFalse(cipher.caesar.preserveWhitespace);
+		assertTrue(cipher.caesar.preserveSymbols);
+		assertFalse(cipher.vigenere.preserveCapitals);
+		assertFalse(cipher.vigenere.preserveWhitespace);
+		assertTrue(cipher.vigenere.preserveSymbols);
 	}
 
 	@Test
-	public void testNoCapitalWhitespaceSymbolDecode() throws InvalidKeywordException, InvalidInputException{
-		Beaufort cipher = new Beaufort(false, false, false);
+	public void testSetInputString(){
+		cipher.preserveCapitals = true;
+		cipher.preserveWhitespace = true;
+		cipher.preserveSymbols = true;
 
-		//Test lowercase decoding
-		String inputString = "yageolzrqujmdag";
-		String keyword = "keyword";
-		String correctOutput = "MESSAGETOENCODE";
-		String output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		inputString = "YAGEOLZRQUJMDAG";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
+		cipher.setInputString(decodedString);
 
-		//Test whitespace decoding
-		inputString = "yageolz rq ujmdag";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
+		assertEquals(decodedString, cipher.inputString);
+		verify(logger, times(1)).debug("Original input string '{}'", decodedString);
+		verify(logger, never()).debug("Removing case");
+		verify(logger, never()).debug("Removing whitespace");
+		verify(logger, never()).debug("Removing symbols");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", decodedString);
+		verify(logger, never()).debug(anyString());
+		verify(logger, times(2)).debug(anyString(), anyString());
+	}
 
-		//Test symbol decoding
-		inputString = "yageolz*rq+ujmdag";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
+	@Test
+	public void testSetInputString_noCapitals(){
+		cipher.preserveCapitals = false;
+		cipher.preserveWhitespace = true;
+		cipher.preserveSymbols = true;
 
-		//Test mixed case, whitespace, symbol decoding
-		inputString = "Yageolz rq^ujmdag";
-		keyword = "keyword";
-		correctOutput = "MESSAGETOENCODE";
-		output = cipher.decode(keyword, inputString);
-		assertEquals(correctOutput, output);
+		cipher.setInputString(decodedString);
+
+		assertEquals(decodedString.toUpperCase(), cipher.inputString);
+		verify(logger, times(1)).debug("Original input string '{}'", decodedString);
+		verify(logger, times(1)).debug("Removing case");
+		verify(logger, never()).debug("Removing whitespace");
+		verify(logger, never()).debug("Removing symbols");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", decodedString.toUpperCase());
+		verify(logger, times(1)).debug(anyString());
+		verify(logger, times(2)).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetInputString_noWhitespace(){
+		cipher.preserveCapitals = true;
+		cipher.preserveWhitespace = false;
+		cipher.preserveSymbols = true;
+
+		cipher.setInputString(decodedString);
+
+		assertEquals(decodedString.replaceAll("\\s", ""), cipher.inputString);
+		verify(logger, times(1)).debug("Original input string '{}'", decodedString);
+		verify(logger, never()).debug("Removing case");
+		verify(logger, times(1)).debug("Removing whitespace");
+		verify(logger, never()).debug("Removing symbols");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", decodedString.replaceAll("\\s", ""));
+		verify(logger, times(1)).debug(anyString());
+		verify(logger, times(2)).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetInputString_noSymbols(){
+		cipher.preserveCapitals = true;
+		cipher.preserveWhitespace = true;
+		cipher.preserveSymbols = false;
+
+		cipher.setInputString(decodedString);
+
+		assertEquals(decodedString.replaceAll("[^a-zA-Z\\s]", ""), cipher.inputString);
+		verify(logger, times(1)).debug("Original input string '{}'", decodedString);
+		verify(logger, never()).debug("Removing case");
+		verify(logger, never()).debug("Removing whitespace");
+		verify(logger, times(1)).debug("Removing symbols");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", decodedString.replaceAll("[^a-zA-Z\\s]", ""));
+		verify(logger, times(1)).debug(anyString());
+		verify(logger, times(2)).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetInputString_blank(){
+		cipher.preserveCapitals = true;
+		cipher.preserveWhitespace = true;
+		cipher.preserveSymbols = true;
+
+		assertThrows(InvalidInputException.class, () -> {
+			cipher.setInputString("");
+		}, "Input must contain at least 1 letter");
+
+		assertEquals("", cipher.inputString);
+		verify(logger, times(1)).debug("Original input string '{}'", "");
+		verify(logger, never()).debug("Removing case");
+		verify(logger, never()).debug("Removing whitespace");
+		verify(logger, never()).debug("Removing symbols");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", "");
+		verify(logger, never()).debug(anyString());
+		verify(logger, times(2)).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetInputString_null(){
+		assertThrows(InvalidInputException.class, () -> {
+			cipher.setInputString(null);
+		}, "Input must conatin at least 1 letter");
+
+		assertEquals("", cipher.inputString);
+		verify(logger, never()).debug(eq("Original input string '{}'"), anyString());
+		verify(logger, never()).debug("Removing case");
+		verify(logger, never()).debug("Removing whitespace");
+		verify(logger, never()).debug("Removing symbols");
+		verify(logger, never()).debug(eq("Cleaned input string '{}'"), anyString());
+		verify(logger, never()).debug(anyString());
+		verify(logger, never()).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetKeyword(){
+		cipher.setKeyword(keyword);
+
+		assertEquals(keyword.toUpperCase(), cipher.keyword);
+		verify(logger, times(1)).debug("Original keyword '{}'", keyword);
+		verify(logger, times(1)).debug("Removing case");
+		verify(logger, times(1)).debug("Removing all non-letters");
+		verify(logger, times(1)).debug("Cleaned keyword '{}'", keyword.toUpperCase());
+		verify(logger, times(2)).debug(anyString());
+		verify(logger, times(2)).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetKeyword_dirty(){
+		cipher.setKeyword(keywordDirty);
+
+		assertEquals(keyword.toUpperCase(), cipher.keyword);
+		verify(logger, times(1)).debug("Original keyword '{}'", keywordDirty);
+		verify(logger, times(1)).debug("Removing case");
+		verify(logger, times(1)).debug("Removing all non-letters");
+		verify(logger, times(1)).debug("Cleaned keyword '{}'", keyword.toUpperCase());
+		verify(logger, times(2)).debug(anyString());
+		verify(logger, times(2)).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetKeyword_blank(){
+		assertThrows(InvalidKeywordException.class, () -> {
+			cipher.setKeyword("");
+		}, "Keyword must contain at least 2 letters");
+
+		assertEquals("", cipher.keyword);
+		verify(logger, times(1)).debug("Original keyword '{}'", "");
+		verify(logger, times(1)).debug("Removing case");
+		verify(logger, times(1)).debug("Removing all non-letters");
+		verify(logger, times(1)).debug("Cleaned keyword '{}'", "");
+		verify(logger, times(2)).debug(anyString());
+		verify(logger, times(2)).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetKeyword_short(){
+		assertThrows(InvalidKeywordException.class, () -> {
+			cipher.setKeyword("A");
+		}, "Keyword must contain at least 2 letters");
+
+		assertEquals("A", cipher.keyword);
+		verify(logger, times(1)).debug("Original keyword '{}'", "A");
+		verify(logger, times(1)).debug("Removing case");
+		verify(logger, times(1)).debug("Removing all non-letters");
+		verify(logger, times(1)).debug("Cleaned keyword '{}'", "A");
+		verify(logger, times(2)).debug(anyString());
+		verify(logger, times(2)).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testSetKeyword_null(){
+		assertThrows(InvalidKeywordException.class, () -> {
+			cipher.setKeyword(null);
+		}, "Keyword cannot be null");
+
+		assertEquals("", cipher.keyword);
+		verify(logger, never()).debug(eq("Original keyword '{}'"), anyString());
+		verify(logger, never()).debug("Removing case");
+		verify(logger, never()).debug("Removing all non-letters");
+		verify(logger, never()).debug(eq("Cleaned keyword '{}'"), anyString());
+		verify(logger, never()).debug(anyString());
+		verify(logger, never()).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testEncode(){
+		cipher = new Beaufort(true, true, true);
+		cipher.keyword = keyword.toUpperCase();
+		cipher.inputString = decodedString;
+		logger = mock(Logger.class);
+		Beaufort.logger = logger;
+
+		cipher.encode();
+
+		assertEquals(encodedString, cipher.outputString);
+		verify(logger, times(1)).debug("Encoding");
+		verify(logger, times(1)).debug("Encoding with Atbash");
+		verify(logger, times(1)).debug("Shifting all letters by 1");
+		verify(logger, times(1)).debug("Encoding with Vigenere");
+		verify(logger, times(1)).debug("Saving output string '{}'", encodedString);
+		verify(logger, times(4)).debug(anyString());
+		verify(logger, times(1)).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testDecode(){
+		cipher = new Beaufort(true, true, true);
+		cipher.keyword = keyword.toUpperCase();
+		cipher.inputString = decodedString;
+		logger = mock(Logger.class);
+		Beaufort.logger = logger;
+
+		cipher.decode();
+
+		assertEquals(encodedString, cipher.outputString);
+		verify(logger, times(1)).debug("Decoding");
+		verify(logger, times(1)).debug("Encoding with Atbash");
+		verify(logger, times(1)).debug("Shifting all letters by 1");
+		verify(logger, times(1)).debug("Encoding with Vigenere");
+		verify(logger, times(1)).debug("Saving output string '{}'", encodedString);
+		verify(logger, times(4)).debug(anyString());
+		verify(logger, times(1)).debug(anyString(), anyString());
+	}
+
+	@Test
+	public void testGetters(){
+		cipher.inputString = decodedString;
+		cipher.outputString = encodedString;
+		cipher.keyword = keyword;
+
+		assertEquals(decodedString, cipher.inputString);
+		assertEquals(encodedString, cipher.outputString);
+		assertEquals(keyword, cipher.keyword);
+	}
+
+	@Test
+	public void testReset(){
+		cipher.inputString = decodedString;
+		cipher.outputString = encodedString;
+		cipher.keyword = keyword;
+
+		cipher.reset();
+
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals("", cipher.keyword);
+	}
+
+	@Test
+	public void testPracticalEncoding(){
+		//Test as original
+		cipher = new Beaufort(true, true, true);
+		String output = cipher.encode(keyword, decodedString);
+		assertEquals(encodedString, output);
+
+		//Test fully cleaned
+		cipher = new Beaufort(false, false, false);
+		output = cipher.encode(keyword, decodedString);
+		assertEquals(encodedStringClean, output);
+	}
+
+	@Test
+	public void testPracticalDecoding(){
+		//Test as original
+		cipher = new Beaufort(true, true, true);
+		String output = cipher.decode(keyword, encodedString);
+		assertEquals(decodedString, output);
+
+		//Test fully cleaned
+		cipher = new Beaufort(false, false, false);
+		output = cipher.decode(keyword, encodedString);
+		assertEquals(decodedStringClean, output);
 	}
 }

src/test/java/com/mattrixwv/cipherstream/monosubstitution/TestCaesar.java

@@ -1,628 +1,405 @@
 //CipherStreamJava/src/test/java/com/mattrixwv/CipherStreamJava/TestCaesar.java
 //Matthew Ellison
 // Created: 07-25-21
-//Modified: 07-09-22
+//Modified: 04-16-23
 package com.mattrixwv.cipherstream.monosubstitution;
 
 
 import static org.junit.jupiter.api.Assertions.assertEquals;
+import static org.junit.jupiter.api.Assertions.assertFalse;
+import static org.junit.jupiter.api.Assertions.assertThrows;
+import static org.junit.jupiter.api.Assertions.assertTrue;
+import static org.mockito.ArgumentMatchers.anyChar;
+import static org.mockito.ArgumentMatchers.eq;
+import static org.mockito.Mockito.mock;
+import static org.mockito.Mockito.never;
+import static org.mockito.Mockito.times;
+import static org.mockito.Mockito.verify;
 
+import org.junit.jupiter.api.BeforeEach;
 import org.junit.jupiter.api.Test;
+import org.slf4j.Logger;
 
 import com.mattrixwv.cipherstream.exceptions.InvalidInputException;
 
 
 public class TestCaesar{
-	@Test
-	public void testEncode() throws InvalidInputException{
-		Caesar cipher = new Caesar(true, true, true);
-
-		//Test lowercase encode
-		String input = "abc";
-		int shift = 3;
-		String correctOutput = "def";
-		String output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		input = "ABC";
-		shift = 3;
-		correctOutput = "DEF";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
+	private Caesar cipher;
+	private Logger logger;
+	//Variables
+	private String inputString = "The quick brown fox jumps over - the lAzy dog";
+	private String inputStringClean = "thequickbrownfoxjumpsoverthelazydog";
+	private String outputString = "Qeb nrfzh yoltk clu grjmp lsbo - qeb iXwv ald";
+	private String outputStringClean = "qebnrfzhyoltkclugrjmplsboqebixwvald";
+	private int shift = 23;
 
 
-		//Test out of bounds shift encoding
-		input = "abc";
-		shift = 29;
-		correctOutput = "def";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test out of bounds shift encoding negative
-		input = "abc";
-		shift = -23;
-		correctOutput = "def";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
 
-
-		//Test whitespace encoding
-		input = "abc def";
-		shift = 3;
-		correctOutput = "def ghi";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test symbol encoding
-		input = "abc-def@";
-		shift = 3;
-		correctOutput = "def-ghi@";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test mixed case, whitespace, and symbol encoding
-		input = "The quick brown fox jumps over - the lazy dog";
-		shift = 23;
-		correctOutput = "Qeb nrfzh yoltk clu grjmp lsbo - qeb ixwv ald";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test mixed case, whitespace, and symbol encoding with negative shift
-		input = "The quick brown fox jumps over - the lazy dog";
-		shift = -3;
-		correctOutput = "Qeb nrfzh yoltk clu grjmp lsbo - qeb ixwv ald";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-	}
-	@Test
-	public void testNoCapitalEncode() throws InvalidInputException{
-		Caesar cipher = new Caesar(false, true, true);
-
-		//Test lowercase encode
-		String input = "abc";
-		int shift = 3;
-		String correctOutput = "def";
-		String output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		input = "ABC";
-		shift = 3;
-		correctOutput = "def";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test out of bounds shift encoding
-		input = "abc";
-		shift = 29;
-		correctOutput = "def";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test out of bounds shift encoding negative
-		input = "abc";
-		shift = -23;
-		correctOutput = "def";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test whitespace encoding
-		input = "abc def";
-		shift = 3;
-		correctOutput = "def ghi";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test symbol decoding
-		input = "abc-def@";
-		shift = 3;
-		correctOutput = "def-ghi@";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test mixed case, whitespace, and symbol encoding
-		input = "The quick brown fox jumps over - the lazy dog";
-		shift = 23;
-		correctOutput = "qeb nrfzh yoltk clu grjmp lsbo - qeb ixwv ald";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test mixed case, whitespace, and symbol encoding with negative shift
-		input = "The quick brown fox jumps over - the lazy dog";
-		shift = -3;
-		correctOutput = "qeb nrfzh yoltk clu grjmp lsbo - qeb ixwv ald";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-	}
-	@Test
-	public void testNoWhitespaceEncode() throws InvalidInputException{
-		Caesar cipher = new Caesar(true, false, true);
-
-		//Test lowercase encoding
-		String input = "abc";
-		int shift = 3;
-		String correctOutput = "def";
-		String output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		input = "ABC";
-		shift = 3;
-		correctOutput = "DEF";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test out of bounds shift encoding
-		input = "abc";
-		shift = 29;
-		correctOutput = "def";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test out of bounds shift encoding negative
-		input = "abc";
-		shift = -23;
-		correctOutput = "def";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test whitespace encoding
-		input = "abc def";
-		shift = 3;
-		correctOutput = "defghi";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test symbol encoding
-		input = "abc-def@";
-		shift = 3;
-		correctOutput = "def-ghi@";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Testing mixed case, whitespace, and symbol encoding
-		input = "The quick brown fox jumps over - the lazy dog";
-		shift = 23;
-		correctOutput = "Qebnrfzhyoltkclugrjmplsbo-qebixwvald";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-		//Testing mixed case, whitespace, and symbol encoding
-		input = "The quick brown fox jumps over - the lazy dog";
-		shift = -3;
-		correctOutput = "Qebnrfzhyoltkclugrjmplsbo-qebixwvald";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-	}
-	@Test
-	public void testNoSymbolEncode() throws InvalidInputException{
-		Caesar cipher = new Caesar(true, true, false);
-
-		//Test lowercase encode
-		String input = "abc";
-		int shift = 3;
-		String correctOutput = "def";
-		String output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		input = "ABC";
-		shift = 3;
-		correctOutput = "DEF";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test out of bounds shift encoding
-		input = "abc";
-		shift = 29;
-		correctOutput = "def";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test out of bounds shift encoding negative
-		input = "abc";
-		shift = -23;
-		correctOutput = "def";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test whitespace encoding
-		input = "abc def";
-		shift = 3;
-		correctOutput = "def ghi";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test symbol decoding
-		input = "abc-def@";
-		shift = 3;
-		correctOutput = "defghi";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test mixed case, whitespace, and symbol encoding
-		input = "The quick brown fox jumps over - the lazy dog";
-		shift = 23;
-		correctOutput = "Qeb nrfzh yoltk clu grjmp lsbo  qeb ixwv ald";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-		//test mixed case, whitespace, and symbol encoding with negative shift
-		input = "The quick brown fox jumps over - the lazy dog";
-		shift = -3;
-		correctOutput = "Qeb nrfzh yoltk clu grjmp lsbo  qeb ixwv ald";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-	}
-	@Test
-	public void testNoCapitalWhitespaceSymbolEncode() throws InvalidInputException{
-		Caesar cipher = new Caesar(false, false, false);
-
-		//Test lowercase encode
-		String input = "abc";
-		int shift = 3;
-		String correctOutput = "def";
-		String output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test uppercase encoding
-		input = "ABC";
-		shift = 3;
-		correctOutput = "def";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test out of bounds shift encoding
-		input = "abc";
-		shift = 29;
-		correctOutput = "def";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test out of bounds shift encoding negative
-		input = "abc";
-		shift = 29;
-		correctOutput = "def";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test whitespace encoding
-		input = "abc def";
-		shift = 3;
-		correctOutput = "defghi";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test symbol encoding
-		input = "abc-def@";
-		shift = 3;
-		correctOutput = "defghi";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test mixed case, whitespace, and symbol encoding
-		input = "The quick brown fox jumps over - the lazy dog";
-		shift = 23;
-		correctOutput = "qebnrfzhyoltkclugrjmplsboqebixwvald";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test mixed case, whitespace, and symbol encoding with negative shift
-		input = "The quick brown fox jumps over - the lazy dog";
-		shift = -3;
-		correctOutput = "qebnrfzhyoltkclugrjmplsboqebixwvald";
-		output = cipher.encode(shift, input);
-		assertEquals(correctOutput, output);
+	@BeforeEach
+	public void setup(){
+		cipher = new Caesar();
+		logger = mock(Logger.class);
+		Caesar.logger = logger;
 	}
 
 
 	@Test
-	public void testDecode() throws InvalidInputException{
-		Caesar cipher = new Caesar(true, true, true);
+	public void testConstructor_default(){
+		cipher = new Caesar();
 
-		//Test lowercase decoding
-		String input = "def";
-		int shift = 3;
-		String correctOutput = "abc";
-		String output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		input = "DEF";
-		shift = 3;
-		correctOutput = "ABC";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test out of bounds shift decoding
-		input = "def";
-		shift = 29;
-		correctOutput = "abc";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test out of bounds shift negative decoding
-		input = "def";
-		shift = -23;
-		correctOutput = "abc";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test whitespace decoding
-		input = "def ghi";
-		shift = 3;
-		correctOutput = "abc def";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test symbol decoding
-		input = "def-ghi@";
-		shift = 3;
-		correctOutput = "abc-def@";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test mixed case, whitespace, and symbol decoding
-		input = "Qeb nrfzh yoltk clu grjmp lsbo - qeb ixwv ald";
-		shift = 23;
-		correctOutput = "The quick brown fox jumps over - the lazy dog";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test mixed case, whitespace, and symbol decoding with negative shift
-		input = "Qeb nrfzh yoltk clu grjmp lsbo - qeb ixwv ald";
-		shift = -3;
-		correctOutput = "The quick brown fox jumps over - the lazy dog";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals(0, cipher.shift);
+		assertFalse(cipher.preserveCapitals);
+		assertFalse(cipher.preserveWhitespace);
+		assertFalse(cipher.preserveSymbols);
 	}
+
 	@Test
-	public void testNoCapitalDecode() throws InvalidInputException{
-		Caesar cipher = new Caesar(false, true, true);
+	public void testConstructor_preservesCapitals(){
+		cipher = new Caesar(true, false, false);
 
-		//Test lowercase decoding
-		String input = "def";
-		int shift = 3;
-		String correctOutput = "abc";
-		String output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		input = "DEF";
-		shift = 3;
-		correctOutput = "abc";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test out of bounds shift decoding
-		input = "def";
-		shift = 29;
-		correctOutput = "abc";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test out of bounds shift negative decoding
-		input = "def";
-		shift = -23;
-		correctOutput = "abc";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test whitespace decoding
-		input = "def ghi";
-		shift = 3;
-		correctOutput = "abc def";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test symbol decoding
-		input = "def-ghi@";
-		shift = 3;
-		correctOutput = "abc-def@";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test mixed case, whitespace, and symbol decoding
-		input = "Qeb nrfzh yoltk clu grjmp lsbo - qeb ixwv ald";
-		shift = 23;
-		correctOutput = "the quick brown fox jumps over - the lazy dog";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test mixed case, whitespace, and symbol with negative shift
-		input = "Qeb nrfzh yoltk clu grjmp lsbo - qeb ixwv ald";
-		shift = -3;
-		correctOutput = "the quick brown fox jumps over - the lazy dog";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals(0, cipher.shift);
+		assertTrue(cipher.preserveCapitals);
+		assertFalse(cipher.preserveWhitespace);
+		assertFalse(cipher.preserveSymbols);
 	}
+
 	@Test
-	public void testNoWhitespaceDecode() throws InvalidInputException{
-		Caesar cipher = new Caesar(true, false, true);
+	public void testConstructor_preservesSymbols(){
+		cipher = new Caesar(false, true, false);
 
-		//Test lowercase decoding
-		String input = "def";
-		int shift = 3;
-		String correctOutput = "abc";
-		String output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		input = "DEF";
-		shift = 3;
-		correctOutput = "ABC";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test out of bounds shift decoding
-		input = "def";
-		shift = 29;
-		correctOutput = "abc";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test out of bounds shift negative decoding
-		input = "def";
-		shift = -23;
-		correctOutput = "abc";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test whitespace decoding
-		input = "def ghi";
-		shift = 3;
-		correctOutput = "abcdef";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test symbol decoding
-		input = "def-ghi@";
-		shift = 3;
-		correctOutput = "abc-def@";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test mixed case, whitespace, and symbol decoding
-		input = "Qeb nrfzh yoltk clu grjmp lsbo - qeb ixwv ald";
-		shift = 23;
-		correctOutput = "Thequickbrownfoxjumpsover-thelazydog";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test mixed case, whitespace, and symbol decoding with negative shift
-		input = "Qeb nrfzh yoltk clu grjmp lsbo - qeb ixwv ald";
-		shift = -3;
-		correctOutput = "Thequickbrownfoxjumpsover-thelazydog";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals(0, cipher.shift);
+		assertFalse(cipher.preserveCapitals);
+		assertTrue(cipher.preserveWhitespace);
+		assertFalse(cipher.preserveSymbols);
 	}
+
 	@Test
-	public void testNoSymbolDecode() throws InvalidInputException{
-		Caesar cipher = new Caesar(true, true, false);
+	public void testConstructor_preservesWhitespace(){
+		cipher = new Caesar(false, false, true);
 
-		//Test lowercase decoding
-		String input = "def";
-		int shift = 3;
-		String correctOutput = "abc";
-		String output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		input = "DEF";
-		shift = 3;
-		correctOutput = "ABC";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test out of bounds shift decoding
-		input = "def";
-		shift = 29;
-		correctOutput = "abc";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test out of bounds shift negative decoding
-		input = "def";
-		shift = -23;
-		correctOutput = "abc";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test whitepace decoding
-		input = "def ghi";
-		shift = 3;
-		correctOutput = "abc def";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test symbol decoding
-		input = "def-ghi!";
-		shift = 3;
-		correctOutput = "abcdef";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-
-
-		//Test mixed case, whitespace, and symbol decoding
-		input = "Qeb nrfzh yoltk clu grjmp lsbo - qeb ixwv ald";
-		shift = 23;
-		correctOutput = "The quick brown fox jumps over  the lazy dog";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test mixed case, whitespace, and symbol decoding with negative shift
-		input = "Qeb nrfzh yoltk clu grjmp lsbo - qeb ixwv ald";
-		shift = -3;
-		correctOutput = "The quick brown fox jumps over  the lazy dog";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals(0, cipher.shift);
+		assertFalse(cipher.preserveCapitals);
+		assertFalse(cipher.preserveWhitespace);
+		assertTrue(cipher.preserveSymbols);
 	}
+
 	@Test
-	public void testNoCapitalWhitespaceSymbolDecode() throws InvalidInputException{
-		Caesar cipher = new Caesar(false, false, false);
+	public void testSetShift(){
+		cipher.setShift(shift);
 
-		//Test lowercase decoding
-		String input = "def";
-		int shift = 3;
-		String correctOutput = "abc";
-		String output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test uppercase decoding
-		input = "DEF";
-		shift = 3;
-		correctOutput = "abc";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
+		assertEquals(shift, cipher.shift);
+		verify(logger, times(1)).debug("Setting shift {}", shift);
+		verify(logger, times(1)).debug("Cleaned shift {}", shift);
+	}
 
+	@Test
+	public void testSetShift_large(){
+		cipher.setShift(shift + 26);
 
-		//Test out of bounds shift decoding
-		input = "def";
-		shift = 29;
-		correctOutput = "abc";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test out of bounds shift negative decoding
-		input = "def";
-		shift = -23;
-		correctOutput = "abc";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
+		assertEquals(shift, cipher.shift);
+		verify(logger, times(1)).debug("Setting shift {}", shift + 26);
+		verify(logger, times(1)).debug("Cleaned shift {}", shift);
+	}
 
+	@Test
+	public void testSetShift_negative(){
+		cipher.setShift(shift - 26);
 
-		//Test whitespace decoding
-		input = "def ghi";
-		shift = 3;
-		correctOutput = "abcdef";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
+		assertEquals(shift - 26, cipher.shift);
+		verify(logger, times(1)).debug("Setting shift {}", shift - 26);
+		verify(logger, times(1)).debug("Cleaned shift {}", shift - 26);
+	}
 
+	@Test
+	public void testSetInputString(){
+		cipher.preserveCapitals = true;
+		cipher.preserveWhitespace = true;
+		cipher.preserveSymbols = true;
 
-		//Test symbol decoding
-		input = "def-ghi@";
-		shift = 3;
-		correctOutput = "abcdef";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
+		cipher.setInputString(inputString);
 
+		assertEquals(inputString, cipher.inputString);
+		verify(logger, times(1)).debug("Original input string '{}'", inputString);
+		verify(logger, never()).debug("Removing case");
+		verify(logger, never()).debug("Removing whitespace");
+		verify(logger, never()).debug("Removing symbols");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", inputString);
+	}
 
-		//Test mixed case, whitespace, and symbol decoding
-		input = "Qeb nrfzh yoltk clu grjmp lsbo - qeb ixwv ald";
-		shift = 23;
-		correctOutput = "thequickbrownfoxjumpsoverthelazydog";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
-		//Test mixed case, whitespace, and symbol decoding with negative shift
-		input = "Qeb nrfzh yoltk clu grjmp lsbo - qeb ixwv ald";
-		shift = -3;
-		correctOutput = "thequickbrownfoxjumpsoverthelazydog";
-		output = cipher.decode(shift, input);
-		assertEquals(correctOutput, output);
+	@Test
+	public void testSetInputString_noCapitals(){
+		cipher.preserveCapitals = false;
+		cipher.preserveWhitespace = true;
+		cipher.preserveSymbols = true;
+
+		cipher.setInputString(inputString);
+
+		assertEquals(inputString.toLowerCase(), cipher.inputString);
+		verify(logger, times(1)).debug("Original input string '{}'", inputString);
+		verify(logger, times(1)).debug("Removing case");
+		verify(logger, never()).debug("Removing whitespace");
+		verify(logger, never()).debug("Removing symbols");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", inputString.toLowerCase());
+	}
+
+	@Test
+	public void testSetInputString_noWhitespace(){
+		cipher.preserveCapitals = true;
+		cipher.preserveWhitespace = false;
+		cipher.preserveSymbols = true;
+
+		cipher.setInputString(inputString);
+
+		assertEquals(inputString.replaceAll("\\s", ""), cipher.inputString);
+		verify(logger, times(1)).debug("Original input string '{}'", inputString);
+		verify(logger, never()).debug("Removing case");
+		verify(logger, times(1)).debug("Removing whitespace");
+		verify(logger, never()).debug("Removing symbols");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", inputString.replaceAll("\\s", ""));
+	}
+
+	@Test
+	public void testSetInputString_noSymbols(){
+		cipher.preserveCapitals = true;
+		cipher.preserveWhitespace = true;
+		cipher.preserveSymbols = false;
+
+		cipher.setInputString(inputString);
+
+		assertEquals(inputString.replaceAll("[^a-zA-Z\\s]", ""), cipher.inputString);
+		verify(logger, times(1)).debug("Original input string '{}'", inputString);
+		verify(logger, never()).debug("Removing case");
+		verify(logger, never()).debug("Removing whitespace");
+		verify(logger, times(1)).debug("Removing symbols");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", inputString.replaceAll("[^a-zA-Z\\s]", ""));
+	}
+
+	@Test
+	public void testSetInputString_blank(){
+		cipher.preserveCapitals = true;
+		cipher.preserveWhitespace = true;
+		cipher.preserveSymbols = true;
+
+		assertThrows(InvalidInputException.class, () -> {
+			cipher.setInputString("");
+		}, "Input must contain at least 1 letter");
+
+		assertEquals("", cipher.inputString);
+		verify(logger, times(1)).debug("Original input string '{}'", "");
+		verify(logger, never()).debug("Removing case");
+		verify(logger, never()).debug("Removing whitespace");
+		verify(logger, never()).debug("Removing symbols");
+		verify(logger, times(1)).debug("Cleaned input string '{}'", "");
+	}
+
+	@Test
+	public void testSetInputString_null(){
+		cipher.preserveCapitals = true;
+		cipher.preserveWhitespace = true;
+		cipher.preserveSymbols = true;
+
+		assertThrows(InvalidInputException.class, () -> {
+			cipher.setInputString(null);
+		}, "Input must contain at least 1 letter");
+
+		assertEquals("", cipher.inputString);
+		verify(logger, never()).debug("Original input string '{}'", "");
+		verify(logger, never()).debug("Removing case");
+		verify(logger, never()).debug("Removing whitespace");
+		verify(logger, never()).debug("Removing symbols");
+		verify(logger, never()).debug("Cleaned input string '{}'", "");
+	}
+
+	@Test
+	public void testEncode(){
+		cipher.inputString = inputString;
+		cipher.shift = shift;
+
+		cipher.encode();
+
+		assertEquals(outputString, cipher.outputString);
+		verify(logger, times(1)).debug("Encoding");
+		verify(logger, times(45)).debug(eq("Working character {}"), anyChar());
+		verify(logger, times(2)).debug("Encoding uppercase");
+		verify(logger, never()).debug("Wrapping arround to Z");
+		verify(logger, times(1)).debug("Wrapping around to A");
+		verify(logger, times(33)).debug("Encoding lowercase");
+		verify(logger, never()).debug("Wrapping around to z");
+		verify(logger, times(31)).debug("Wrapping around to a");
+		verify(logger, times(45)).debug(eq("Encoded character {}"), anyChar());
+		verify(logger, times(1)).debug("Saving encoded string '{}'", outputString);
+	}
+
+	@Test
+	public void testEncode_negative(){
+		cipher.inputString = inputString;
+		cipher.shift = shift - 26;
+
+		cipher.encode();
+
+		assertEquals(outputString, cipher.outputString);
+		verify(logger, times(1)).debug("Encoding");
+		verify(logger, times(45)).debug(eq("Working character {}"), anyChar());
+		verify(logger, times(2)).debug("Encoding uppercase");
+		verify(logger, times(1)).debug("Wrapping around to Z");
+		verify(logger, never()).debug("Wrapping around to A");
+		verify(logger, times(33)).debug("Encoding lowercase");
+		verify(logger, times(2)).debug("Wrapping around to z");
+		verify(logger, never()).debug("Wrapping around to a");
+		verify(logger, times(45)).debug(eq("Encoded character {}"), anyChar());
+		verify(logger, times(1)).debug("Saving encoded string '{}'", outputString);
+	}
+
+	@Test
+	public void testDecode(){
+		cipher.inputString = outputString;
+		cipher.shift = shift;
+
+		cipher.decode();
+
+		assertEquals(inputString, cipher.outputString);
+		verify(logger, times(1)).debug("Decoding");
+		verify(logger, times(45)).debug(eq("Working character {}"), anyChar());
+		verify(logger, times(2)).debug("Decoding uppercase");
+		verify(logger, times(1)).debug("Wrapping around to Z");
+		verify(logger, never()).debug("Wrapping around to A");
+		verify(logger, times(33)).debug("Decoding lowercase");
+		verify(logger, times(31)).debug("Wrapping around to z");
+		verify(logger, never()).debug("Wrapping around to a");
+		verify(logger, times(45)).debug(eq("Decoded character {}"), anyChar());
+		verify(logger, times(1)).debug("Saving decoded string '{}'", inputString);
+	}
+
+	@Test
+	public void testDecode_negative(){
+		cipher.inputString = outputString;
+		cipher.shift = shift - 26;
+
+		cipher.decode();
+
+		assertEquals(inputString, cipher.outputString);
+		verify(logger, times(1)).debug("Decoding");
+		verify(logger, times(45)).debug(eq("Working character {}"), anyChar());
+		verify(logger, times(2)).debug("Decoding uppercase");
+		verify(logger, never()).debug("Wrapping around to Z");
+		verify(logger, times(1)).debug("Wrapping around to A");
+		verify(logger, times(33)).debug("Decoding lowercase");
+		verify(logger, never()).debug("Wrapping around to z");
+		verify(logger, times(2)).debug("Wrapping around to a");
+		verify(logger, times(45)).debug(eq("Decoded character {}"), anyChar());
+		verify(logger, times(1)).debug("Saving decoded string '{}'", inputString);
+	}
+
+	@Test
+	public void testGetters(){
+		cipher.inputString = inputString;
+		cipher.outputString = outputString;
+		cipher.shift = shift;
+
+		assertEquals(inputString, cipher.getInputString());
+		assertEquals(outputString, cipher.getOutputString());
+		assertEquals(shift, cipher.getShift());
+	}
+
+	@Test
+	public void testReset(){
+		cipher.inputString = inputString;
+		cipher.outputString = outputString;
+		cipher.shift = shift;
+
+		cipher.reset();
+
+		assertEquals("", cipher.inputString);
+		assertEquals("", cipher.outputString);
+		assertEquals(0, cipher.shift);
+		verify(logger, times(1)).debug("Resetting fields");
+	}
+
+	@Test
+	public void testPracticalEncoding(){
+		cipher = new Caesar(true, true, true);
+		logger = mock(Logger.class);
+		Caesar.logger = logger;
+		String output = cipher.encode(shift, inputString);
+
+		assertEquals(inputString, cipher.inputString);
+		assertEquals(shift, cipher.shift);
+		assertEquals(outputString, cipher.outputString);
+		assertEquals(outputString, output);
+	}
+
+	@Test
+	public void testPracticalEncoding_clean(){
+		cipher = new Caesar(false, false, false);
+		logger = mock(Logger.class);
+		Caesar.logger = logger;
+		String output = cipher.encode(shift, inputString);
+
+		assertEquals(inputStringClean, cipher.inputString);
+		assertEquals(shift, cipher.shift);
+		assertEquals(outputStringClean, cipher.outputString);
+		assertEquals(outputStringClean, output);
+	}
+
+	@Test
+	public void testPracticalEncoding_negative(){
+		cipher = new Caesar(true, true, true);
+		logger = mock(Logger.class);
+		Caesar.logger = logger;
+		String output = cipher.encode(shift, inputString);
+
+		assertEquals(inputString, cipher.inputString);
+		assertEquals(shift, cipher.shift);
+		assertEquals(outputString, cipher.outputString);
+		assertEquals(outputString, output);
+	}
+
+	@Test
+	public void testPracticalDecoding(){
+		cipher = new Caesar(true, true, true);
+		logger = mock(Logger.class);
+		Caesar.logger = logger;
+
+		String output = cipher.decode(shift, outputString);
+
+		assertEquals(outputString, cipher.inputString);
+		assertEquals(shift, cipher.shift);
+		assertEquals(inputString, cipher.outputString);
+		assertEquals(inputString, output);
+	}
+
+	@Test
+	public void testPracticalDecoding_clean(){
+		cipher = new Caesar(false, false, false);
+		logger = mock(Logger.class);
+		Caesar.logger = logger;
+
+		String output = cipher.decode(shift, outputString);
+
+		assertEquals(outputStringClean, cipher.inputString);
+		assertEquals(shift, cipher.shift);
+		assertEquals(inputStringClean, cipher.outputString);
+		assertEquals(inputStringClean, output);
+	}
+
+	@Test
+	public void testPracticalDecoding_negative(){
+		cipher = new Caesar(true, true, true);
+		logger = mock(Logger.class);
+		Caesar.logger = logger;
+		String output = cipher.decode(shift - 26, outputString);
+
+		assertEquals(outputString, cipher.inputString);
+		assertEquals(shift - 26, cipher.shift);
+		assertEquals(inputString, cipher.outputString);
+		assertEquals(inputString, output);
 	}
 }